PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33985.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 205aa    MW: 23140.2 Da    PI: 9.0269
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33985.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer78.87.2e-251467357
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                 + +Y+eClkNh +++G h++DGC  f+p  geegt +alkC  C+CHRnFHR+++
   KHN33985.1 14 NEKYHECLKNHTIKTGVHTLDGCIKFLPL-GEEGTLDALKCLMCNCHRNFHRKKT 67
                 578*************************9.999********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-161667IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-211666IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.4E-241667IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.7051766IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.26E-18129203IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-28131203IPR009057Homeodomain-like
TIGRFAMsTIGR015657.2E-24142198IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTPTPPTLAQ NNDNEKYHEC LKNHTIKTGV HTLDGCIKFL PLGEEGTLDA LKCLMCNCHR  60
NFHRKKTPNY TYLVPYYRHS PLPLAAYYGE QVGYPHVQGQ QCTTLALPSR SRGSGGAQSS  120
REDMEAVSDP TSGATPHGGS SKKRFRTRFT QEQKEKMLAF AEKLGWRILK HDESDVQEFC  180
AETSIQPHVL KVWVNNNKHT LGKKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-231432001875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33985.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351410.0AC235141.1 Glycine max strain Williams 82 clone GM_WBa0071B20, complete sequence.
GenBankAC2351610.0AC235161.1 Glycine max strain Williams 82 clone GM_WBa0098D20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028219892.11e-154zinc-finger homeodomain protein 2-like
SwissprotA2Z2594e-57ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A0B2RL981e-154A0A0B2RL98_GLYSO; ZF-HD homeobox protein
STRINGGLYMA20G18450.21e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.17e-56homeobox protein 22
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]