PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN33880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ZF-HD | ||||||||
Protein Properties | Length: 191aa MW: 20957.5 Da PI: 6.5776 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 77.9 | 1.4e-24 | 59 | 113 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + +Y+eClkNh +++G+h++DGC f+p g+egt +alkC C+ HRnFHR+e+ KHN33880.1 59 NEKYHECLKNHTVKIGSHTLDGCIKFLPL-GKEGTLDALKCIVCNYHRNFHRKETP 113 679*************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 2.0E-21 | 61 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.8E-24 | 61 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-16 | 61 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 20.618 | 62 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MEFKQHVETE LRMPVATVSH EDFGIPPSSQ GEEEPVAAAI PVVIPMTPTP PTMSQNNNNE 60 KYHECLKNHT VKIGSHTLDG CIKFLPLGKE GTLDALKCIV CNYHRNFHRK ETPNDTYLVP 120 YYRHSSLPLA AYYGEQVGYP HVQGQQCTTL ALPSRSRGSG GAHSSREDME AMSDPTSGAT 180 PHGGSNKALQ D |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN33880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235042 | 0.0 | AC235042.1 Glycine max strain Williams 82 clone GM_WBa0093J18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003518104.1 | 1e-123 | zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A0B2RL06 | 1e-141 | A0A0B2RL06_GLYSO; ZF-HD homeobox protein | ||||
STRING | GLYMA02G31190.2 | 1e-123 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 5e-22 | homeobox protein 22 |
Publications ? help Back to Top | |||
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