PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33870.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 262aa    MW: 28478.6 Da    PI: 5.0421
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33870.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-183989155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  KHN33870.1 39 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 89
                59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-114089IPR001471AP2/ERF domain
SMARTSM003801.7E-3340104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-2940100IPR001471AP2/ERF domain
PROSITE profilePS5103221.9314098IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-184099IPR016177DNA-binding domain
CDDcd000181.31E-164198No hitNo description
PRINTSPR003676.6E-94152IPR001471AP2/ERF domain
PRINTSPR003676.6E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVKSENKIQR EQPSSSKLMR PLSSSSSSSS SDNNNKNKKK YKGVRMRSWG SWVSEIRAPN  60
QKTRIWLGSY STAEAAARAY DAALLCLKGS SATNLNFPSS SSSSQHYIIP QDTSMMSPKS  120
IQRVAAAAAN NFLDNNAIAI NNNVTTPPSP ISPHSPPLAS TPSSSSFVSS PSMSSSSPSD  180
QIDDDVSLLT PFGAYTTAVA TTTICDQENE SMAMMESWYG LEGLQSPKYV DQMLSGAFFD  240
IDSTQLLDDL YEESDIRLWS FC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2284550.0FJ228455.1 Glycine max AP2 domain-containing transcription factor 3 (AP2-3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028196868.10.0ethylene-responsive transcription factor ERF014-like
TrEMBLA0A445HCS80.0A0A445HCS8_GLYSO; Ethylene-responsive transcription factor ERF012
STRINGGLYMA13G02860.21e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47983156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.15e-28ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]