PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33752.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 398aa    MW: 43684.8 Da    PI: 5.7688
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33752.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH292e-09204251455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i ++++ L++l+P +    +k   Ka +L + ++Y++sLq
  KHN33752.1 204 SHSLAERVRREKISERMNYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 251
                 8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.34E-10198255No hitNo description
SuperFamilySSF474594.32E-17198269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-17200267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.504200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-6204251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-10206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MLGYANPSGN LAVDGDMTVL ERQRARMKWQ EEQEYFSGNS FNGVFSSSSS LHVSDSIMVA  60
ADSGCALAEV VAQAQPRSIN KPSAAPGLHA NSSSISRTFS CPPALVDPEP KPTDSSIGKD  120
SFKKRKTDKP HNPKVVAENE NKDKRIKVGA DDGESKITKC NTINTNTNNK ETCTDTSNSK  180
QNSKASEKPD YIHVRARRGQ ATDSHSLAER VRREKISERM NYLQDLVPGC NKVTGKAGML  240
DEIINYVQSL QRQVEFLSMK LAAVNPRLDF SMDDLFDKDV FPTCAANFPN IGMSSTSSDI  300
TNPAYLPFNS PQQIFQYDGL DTGINPSDVG LRRTISAPVS MPETYLQSSC FTQMLPSSTW  360
EGDFQNLCNF DVDQARATSF PSQLLSGLVE AGNLKMEM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33752.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0982351e-171BT098235.1 Soybean clone JCVI-FLGm-26H15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522925.10.0transcription factor bHLH63
RefseqXP_028227314.10.0transcription factor bHLH63-like
TrEMBLA0A445KUL50.0A0A445KUL5_GLYSO; Transcription factor bHLH63 isoform B
TrEMBLI1JSN90.0I1JSN9_SOYBN; Uncharacterized protein
STRINGGLYMA04G01400.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-58cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]