PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33617.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 207aa    MW: 24446.9 Da    PI: 5.4846
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33617.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.10.000174585455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                ++ e ErrRR+++ s++  Lr+++            Ka+i+e A+ YI +Lq
  KHN33617.1 45 KNLETERRRREKLSSRLLMLRSMMN-----------KATIVEDAITYIEKLQ 85
                56689*****************975...........559***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1138100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-74089No hitNo description
Gene3DG3DSA:4.10.280.106.3E-940101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-54790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEYEDEDWLC VTMDEFSLAT ENGFSRQMMS RKRNYDDDTR EYKSKNLETE RRRREKLSSR  60
LLMLRSMMNK ATIVEDAITY IEKLQDKVQN LSQELHQMEA TSVETAETKI VEIDAVEDMK  120
NWGIQEEVRV AQINENKLWV KIIIEKKRGR FNRLMQALNN FGIELIDTNL TTTKGSFLIT  180
SCIKCKNGER FEIHQAKNLL QDVINHI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14954ERRRRE
25055RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33617.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-47AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020233986.11e-124transcription factor DYT1
TrEMBLA0A445GPY61e-149A0A445GPY6_GLYSO; Transcription factor DYT1
STRINGXP_007148286.11e-118(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.14e-28bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]