PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33594.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 347aa    MW: 39183.8 Da    PI: 8.5957
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33594.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12171218355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L +A++Y+k++q
  KHN33594.1 171 QDHIIAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGEAIKYLKQMQ 218
                 5799************************.....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.018168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-16172233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10172218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17172230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.50E-12173222No hitNo description
SMARTSM003534.1E-14174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MRSSHMEISS IRGLPELGII EDPNFLHQWQ LNSIDTTSLK GAAFGDILQK HSFSDNSNFN  60
PKTSMETSQT GIERYAKQLG DNSWNHNKSQ QQTPETQFAS CSNLLSFVNT NYTSELGLVK  120
PKVEMACPKI DNNALADMLI SQGTLGNQNY IFKANQETKK IKTRPKLSQP QDHIIAERKR  180
REKLSQRFIA LSALVPGLKK MDKASVLGEA IKYLKQMQEK VSALEEEQNR KRTVESVVIV  240
KKSQLSSDAE DSSSETGGTF VEALPEIEAR FWERNVLIRI HCEKNKGVIE KTISEIEKLH  300
LKVINSSALT FGSFILDITI IAQMDMEFCM TVKDLVRSLR SAFSYFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14169228564Transcription factor MYC2
5gnj_B1e-14169228564Transcription factor MYC2
5gnj_E1e-14169228564Transcription factor MYC2
5gnj_F1e-14169228564Transcription factor MYC2
5gnj_G1e-14169228564Transcription factor MYC2
5gnj_I1e-14169228564Transcription factor MYC2
5gnj_M1e-14169228564Transcription factor MYC2
5gnj_N1e-14169228564Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181ERKRRE
2177182RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33594.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0697380.0AF069738.1 Glycine max symbiotic ammonium transporter (SAT1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028203270.10.0transcription factor bHLH25-like isoform X2
SwissprotQ9T0722e-60BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A445GQ170.0A0A445GQ17_GLYSO; Transcription factor bHLH25 isoform B
STRINGGLYMA15G06680.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-60bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]