PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN33452.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 193aa MW: 21285.7 Da PI: 6.761 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.5 | 5.7e-16 | 133 | 161 | 4 | 32 |
GATA 4 CgttkTplWRrgpdgnktLCnaCGlyyrk 32 C+t kTp+WR+gp g+ktLCnaCGl y k KHN33452.1 133 CKTRKTPMWRKGPLGPKTLCNACGLQYLK 161 *************************9966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.9E-12 | 119 | 164 | No hit | No description |
SMART | SM00401 | 1.1E-7 | 122 | 175 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.0E-13 | 123 | 161 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.07E-12 | 128 | 173 | No hit | No description |
Pfam | PF00320 | 1.4E-13 | 133 | 161 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.172 | 133 | 159 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MDSGKTNEAS NSKLVHDFDL NIAYVEEFDH VNAENEFSSP ILVNTTQQAC KNSIENMNIE 60 DAIANNRDTT IQANSAAKGA TSEDTRQVEP KYIASVSFTP ARISQYLRRR RHYRGAESKQ 120 STDPDKLCTN FYCKTRKTPM WRKGPLGPKT LCNACGLQYL KMVKGTGSGL PAAVSDEGDA 180 SVPAETVERD SNL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN33452.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006598297.1 | 1e-141 | GATA zinc finger domain-containing protein 9 | ||||
TrEMBL | A0A445GPA1 | 1e-143 | A0A445GPA1_GLYSO; GATA transcription factor 29 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20174 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20750.1 | 3e-13 | GATA transcription factor 29 |
Publications ? help Back to Top | |||
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