PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33374.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 665aa    MW: 75250.8 Da    PI: 6.1479
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33374.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3581.4e-1092916623373
        GRAS   3 elLlecAeavssgd.lelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 +lL+ cA+av+sg+  + a++l+ ++++++sp gd +qRla+yf +AL+arl +++ + y+ l +s+ +  + ++ ++a++++  ++P+ k++ + aN+
  KHN33374.1 291 TLLMLCAQAVASGSsPSFAKQLVMQIKQHSSPIGDETQRLAHYFGNALEARLDGTGYQFYSVLLSSKRT--SAKDMVKAYHVYLSICPFEKLAVIFANN 387
                 689*********651579******************************************999777666..499999********************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                  I +  e ++++HiiDf+i +G++WpaL+  L+ Rp+gpp+lRiTg++ p++g   +e++ etg+rLa++++++++pfef++ +a+r++++++e+L+++
  KHN33374.1 388 SICNLSEDAKTIHIIDFGIRYGFKWPALISRLSRRPGGPPKLRITGIDVPQPGlrPQERVLETGRRLANYCKRFNLPFEFHA-IAQRWDTIRVEDLKIE 485
                 *******************************************************9**************************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 ++E +aVn+ +q ++llde+v l+++rd+vLkl+k+ +P+++v+   + +++ + F+ rf eal++ysalf++l+++++re+  r ++E+el+grei+n
  KHN33374.1 486 TDEFVAVNCLFQFEHLLDETVVLNNPRDAVLKLIKKANPDIFVHGIVNGSYDVPFFVSRFREALYHYSALFNMLDTNVGREDPIRLMYEKELFGREIMN 584
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                 ++aceg er+er +t+++W+ r ++ GF+p+pl++++ ++ k  lr  + ++ + +e + +++++gWk+r L++ S+W
  KHN33374.1 585 IIACEGCERVERPQTYKQWQLRNMRNGFRPLPLDQRIIDKLKGRLRDDAyNNNFLLEVDGNWVLQGWKGRILYASSCW 662
                 *********************************************99888999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.398263642IPR005202Transcription factor GRAS
PfamPF035144.8E-107291662IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MDRRAVSSIN TDQECPLDDT DSSSALFSYI KQMLMEDDTQ ESYSIFHDSL ALQHTERSFY  60
QVITHNYPPS SSSPHHQSPE QSLSVSSSDS SSSCSTNSTS SSADSPFRSL PPLLPHSTFP  120
IPHNFFFHSN STQSSINTTL GFFDNPLAEI SDSAFLQQFE RGVDQGTRFL PLHTTPFNIN  180
VDPNNTAFSS SFTKTKTPPP QMLIKTEAEG EPFLAGRKQR QREEYEADGR SRKQSAPYMD  240
DSELSELFDK VLLGTGLGKG VPPDTTHETI LTNMFDGDAS KSDEEVVDLG TLLMLCAQAV  300
ASGSSPSFAK QLVMQIKQHS SPIGDETQRL AHYFGNALEA RLDGTGYQFY SVLLSSKRTS  360
AKDMVKAYHV YLSICPFEKL AVIFANNSIC NLSEDAKTIH IIDFGIRYGF KWPALISRLS  420
RRPGGPPKLR ITGIDVPQPG LRPQERVLET GRRLANYCKR FNLPFEFHAI AQRWDTIRVE  480
DLKIETDEFV AVNCLFQFEH LLDETVVLNN PRDAVLKLIK KANPDIFVHG IVNGSYDVPF  540
FVSRFREALY HYSALFNMLD TNVGREDPIR LMYEKELFGR EIMNIIACEG CERVERPQTY  600
KQWQLRNMRN GFRPLPLDQR IIDKLKGRLR DDAYNNNFLL EVDGNWVLQG WKGRILYASS  660
CWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4928166411380Protein SCARECROW
5b3h_A1e-4928166410379Protein SCARECROW
5b3h_D1e-4928166410379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33374.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028202214.10.0scarecrow-like protein 14 isoform X1
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A445GNR30.0A0A445GNR3_GLYSO; Scarecrow-like protein 14 isoform A
STRINGGLYMA15G04190.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]