PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33373.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 727aa    MW: 81902.5 Da    PI: 5.7944
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33373.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.82.8e-1153527241373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL+ cA+avss+d++ a++lL+++++++s  gd+ qRla+y+++AL+arl++  ++++ ++   + ++ ++++ l+a++++  ++P+ kf+h+ aN
  KHN33373.1 352 LRTLLVLCAQAVSSSDNRTANELLKQIRQHSSALGDASQRLAHYVANALEARLVG--DGTATQIFYMSYKKFTTTDFLKAYQVLISACPFKKFAHFFAN 448
                 5789**************************************************9..555544544444445699************************ PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 ++I++ ++g+e++HiiDf+i +G+QWp L++ L+ R++gpp+lRiTg++ p++g   +e++eetg rLak++++++vpfe+++++++++e++++e+L++
  KHN33373.1 449 KMIMKTADGAETLHIIDFGILYGFQWPILIKFLSGRRGGPPKLRITGIEYPQPGfrPTERIEETGCRLAKYCKRFNVPFEYKAIASRNWETIQIEDLKI 547
                 *****************************************************9*****************************9999************ PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +++E+laVn+ ++ ++lldes +++s+r++v++l+++++P+++v++  +  +n++ Fl+rf eal +ys+++d++++ ++re+e+r ++Ere+lgrei+
  KHN33373.1 548 ERNEVLAVNCLVRFKNLLDESIEVNSPRKAVMNLIRKMKPDIFVHCVVNGTYNAPFFLTRFREALFHYSSMYDMFDTLVSRENEWRLMLEREFLGREIM 646
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 nvvace  er+er et+++W++r ++aGFk++pl+++++++ +  lr+ + + +  +e+ +++++gWk+r L++ ++W
  KHN33373.1 647 NVVACEALERVERPETYKQWQARNTRAGFKQLPLDKEIMTKFRGKLREWYHRDFVFDEDGNWMLQGWKGRILYASTCW 724
                 **************************************************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.747326705IPR005202Transcription factor GRAS
PfamPF035149.7E-113352724IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MDPNFIISGN DFDESKQWDL NGHYTNLLND PLSDVGPLGF SHNSILNSEP FVSSSASAAA  60
ASSSTATVAD PSPEEDTDFS ETFKFISQIL LEENFEQKPC MCYDPLTLQH TEKSFYEALE  120
LEPSLLLSPN QHPLESPDGN SSNSTTDSAN SHDLKPSSPN TPASDALHSS SHAPSLVVPP  180
HALTKINDGT VDLDSSVTKL LAENIFSDAD SMLQFKRGLE EASKFLPQGP QLFTGLESPT  240
VSSEPKGRGV ALKMENSFGV KNRKNHARQD DEEERSNKQS AVSAVCVEEE SEISEIFDRV  300
LLSVENVPLC AENNGSVAVG DSNTKLIEKS SLSDGGKVRS KRQGRQKETV DLRTLLVLCA  360
QAVSSSDNRT ANELLKQIRQ HSSALGDASQ RLAHYVANAL EARLVGDGTA TQIFYMSYKK  420
FTTTDFLKAY QVLISACPFK KFAHFFANKM IMKTADGAET LHIIDFGILY GFQWPILIKF  480
LSGRRGGPPK LRITGIEYPQ PGFRPTERIE ETGCRLAKYC KRFNVPFEYK AIASRNWETI  540
QIEDLKIERN EVLAVNCLVR FKNLLDESIE VNSPRKAVMN LIRKMKPDIF VHCVVNGTYN  600
APFFLTRFRE ALFHYSSMYD MFDTLVSREN EWRLMLEREF LGREIMNVVA CEALERVERP  660
ETYKQWQARN TRAGFKQLPL DKEIMTKFRG KLREWYHRDF VFDEDGNWML QGWKGRILYA  720
STCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-473357261379Protein SCARECROW
5b3h_D7e-473357261379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33373.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025981534.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC100779806
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A445GNX10.0A0A445GNX1_GLYSO; Scarecrow-like protein 14
STRINGGLYMA15G04173.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]