PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33332.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 411aa    MW: 45581.8 Da    PI: 6.0561
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33332.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12345390655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR +i +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  KHN33332.1 345 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 390
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.288339389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-17342403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.85E-13343394No hitNo description
Gene3DG3DSA:4.10.280.102.8E-16344403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-14345395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9345390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MESDLEQQPQ VNSSGLTRYR SAPSSYFSNI IDREFYEHVF NRPSSPETER VFSRFVNSLN  60
SEEEDSLHHK LSTDSSSSAA VKEEVNQQDQ GINEEHVAVA ALQQSNNNIN NYNNNNNNNY  120
SASHNFYQSS SSKPPLPNQN PNLPSAMEQG SFSMGLRHSG NNSNLTRHSS SPAGLFSQIN  180
IENVYAGVRG MGSLGAVNNS IEDAKFSSSR RLKNQPNYSS SGRMSSIAEI GDKGYRESSP  240
DSEAFADGND FMAGYQVGHW DDTAMMSDNV GGLKRFSEED SKPFSGLNAV ETQNETGQTH  300
APLAHQLSLP NTSAEMAAIE KFLQFSDSVP CKIRAKRGCA THPRSIAERV RRTKISERMR  360
KLQDLVPNMD KQTNTADMLD LAVDYIKDLQ KQVQTLSDCH AKCTCSHEKQ Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33332.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954350.0BT095435.1 Soybean clone JCVI-FLGm-25M5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028204074.10.0transcription factor bHLH122-like isoform X2
TrEMBLA0A445GNK50.0A0A445GNK5_GLYSO; Transcription factor bHLH122 isoform C
STRINGGLYMA15G03740.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.11e-72bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]