PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN33306.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 260aa MW: 29278 Da PI: 8.8371 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 89.4 | 4.9e-28 | 97 | 184 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YAk+vGF +r+sk ++s+r+g+ + r +vC++eg+r ++k++ k r+raetr+gC+a++ v+k ++gkw++tk+ eH+H+l+p KHN33306.1 97 FYNAYAKRVGFIIRVSKLSRSRRDGTAIGRALVCNREGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVITKFIMEHTHPLTP 184 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.6E-25 | 97 | 184 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MKEYFVAAVE FGIDASINGE TVGNATIVQI NSSTADGNKV GCSSFNPAYK QGHDDNITQD 60 SSGGDTIPSG IPAVSVASVD EPYVGQEFES EAAAHAFYNA YAKRVGFIIR VSKLSRSRRD 120 GTAIGRALVC NREGYRMPDK REKIVRQRAE TRVGCRAMIL VRKVSSGKWV ITKFIMEHTH 180 PLTPGKGRRD CIYEQYPNEH DKIRELSQQL AIERKRSATY KRHLELIFEQ IEEHNDSLSK 240 KIQHIVDSVK EMETKEQNQR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN33306.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028202432.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X2 | ||||
TrEMBL | A0A445GNE1 | 0.0 | A0A445GNE1_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform A | ||||
STRING | GLYMA15G03440.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 3e-98 | FAR1 family protein |
Publications ? help Back to Top | |||
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