PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN33298.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 425aa MW: 46418.4 Da PI: 6.3966

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN33298.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.1	5.2e-10	229	287	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l se+ KHN33298.1 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLNSEN 287 9**********************************************999988888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-15	225	289	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.001	227	290	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-10	229	280	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-10	229	284	No hit	No description
Pfam	PF00170	5.2E-9	229	287	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.02E-25	230	279	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MDKDKSLGLP PPSGRYSGYS STGSVFNVKS EPSPSSSTTL YPPLAPGTTS SESSHFGHGL 60 STDSSGFSHD ISRMPDNPPR NRGHRRAHSE ILTLPDDISF DSDLGVVGGG DGPSFSDDAE 120 EDLLSMYLDM DKFNSSSATS TFQMVEPSNA VGASASTPAS GAPTSSTENV VIGTNERPRV 180 RHQHSQSMDG STTIKPEMLV SGSEDMSAAD SKKAMSAAKL AELALIDPKR AKRIWANRQS 240 AARSKERKMR YIAELERKVQ TLQTEATSLS AQLTLLQRDT NGLNSENNEL KLRLQTMEQQ 300 VHLQDALNDA LKEEIQHLKI LTGQAMPPNG GPMMNFASFG GGQQFYPNNH AMHTLLAAQQ 360 FQQLQIHPQK QQQHQFQQLQ QQQMLQQQRE QHQQSIDLKM REATPTPCPK DNASSDVNPS 420 GAKDC

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MDKDKSLGLP PPSGRYSGYS STGSVFNVKS EPSPSSSTTL YPPLAPGTTS SESSHFGHGL  60
STDSSGFSHD ISRMPDNPPR NRGHRRAHSE ILTLPDDISF DSDLGVVGGG DGPSFSDDAE  120
EDLLSMYLDM DKFNSSSATS TFQMVEPSNA VGASASTPAS GAPTSSTENV VIGTNERPRV  180
RHQHSQSMDG STTIKPEMLV SGSEDMSAAD SKKAMSAAKL AELALIDPKR AKRIWANRQS  240
AARSKERKMR YIAELERKVQ TLQTEATSLS AQLTLLQRDT NGLNSENNEL KLRLQTMEQQ  300
VHLQDALNDA LKEEIQHLKI LTGQAMPPNG GPMMNFASFG GGQQFYPNNH AMHTLLAAQQ  360
FQQLQIHPQK QQQHQFQQLQ QQQMLQQQRE QHQQSIDLKM REATPTPCPK DNASSDVNPS  420
GAKDC

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN33298.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-150	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028204610.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	1e-153	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A445GNA3	0.0	A0A445GNA3_GLYSO; Putative transcription factor PosF21 isoform A
STRING	GLYMA15G03350.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5517	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-128	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]