PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33103.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 778aa    MW: 87004 Da    PI: 6.3012
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33103.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1179.6e-37102178177
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 +Cqv+gCead+se+k yhrrh+vC  +++a++v+++++ +r+CqqC++fh ls+fDe+krsCrr+L++hn rrr+k 
  KHN33103.1 102 RCQVPGCEADISELKGYHRRHRVCLRCANAATVMLNDEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKP 178
                 6************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.8E-2897164IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.231100177IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.37E-33101179IPR004333Transcription factor, SBP-box
PfamPF031107.0E-27103177IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MDDAEDPSSI WDFSYLLDFD LDDQDIIINN NNSLPLPLND HPAPSEIPQN DRVRKRDPRM  60
TCSNFLAGRV PCACPELDAK LEDEGLPVKK RARTARASAS ARCQVPGCEA DISELKGYHR  120
RHRVCLRCAN AATVMLNDEA KRYCQQCGKF HVLSDFDEGK RSCRRKLERH NTRRRRKPPA  180
DSGGAAHSEL LQPVAQNEEH NYHVEAGKDC SNLSTDVNDV GVSPDHEDEP VSIPSLAPDH  240
EDEPVSIPSL APEAQNINSD SVVSLAVSGE MRVNSGNTSN SPSYCNNKNA YSSVCQTGRI  300
SFKLYDWNPA EFPRRLRHQI FQWLANMPVE LEGYIRPGCT ILTVFIAMPN IMWITLLKDS  360
LEYVHDFVAP GKMLSGRGTA LVHLNDMIFR VMKDGTSVTK VEVNMLAPRL HYVHPTYFEA  420
GKPMEFVACG SNLLQPKFRL LVSFSGKYLK CEYCVPSPHS WTEDNISCAF DNQLYKIYVP  480
HTEESLFGPA FIEVENESGL SNFIPVLIGD KEICTEMKTL QQKLDVSLLS KQFQSASGGS  540
ICSSCETFAL SHTSSSDFLV DIAWLLKDTT SENFDRVMTA SQIQRYCHLL DFLICNDSTI  600
ILGKILPNLI ILTESVESNN VVINRTSDVD ITQLLNHIHN ASNVICQKHQ QSRSIIVHSE  660
MEGFKLAQGC SQDNMLSVAI NSQGILSRTD EKWGVLKSPT SNDKTERIPL LKRDIIMSVE  720
ELPERYGRRC LGRGFLTSRP AIFVIVSVAV CLGVCVAVLH PGRVSELAVS VRRCLFNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A6e-43101186488squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163175RRKLERHNTRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33103.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547221.10.0squamosa promoter-binding-like protein 7 isoform X1
RefseqXP_028203738.10.0squamosa promoter-binding-like protein 7 isoform X1
TrEMBLA0A445GRK20.0A0A445GRK2_GLYSO; Squamosa promoter-binding-like protein 7 isoform A
TrEMBLI1MF880.0I1MF88_SOYBN; Uncharacterized protein
STRINGGLYMA15G10620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]