PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN32934.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 774aa MW: 88730.4 Da PI: 6.3112

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN32934.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.1	2.4e-31	70	161	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw v+ ++ eHnHel+p KHN32934.1 70 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWIVSGFVREHNHELVP 161 9*************************************998888545677889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.8E-30	70	161	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.2E-33	282	374	IPR018289	MULE transposase domain
Pfam	PF04434	9.1E-12	547	593	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.029	559	595	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-9	570	597	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence Send to blast
MDNEVEVLEF DIGLGGGEGE YDDDDGGGID EEELGVATGG GEIYLPEVDL LDLEPCEGME 60 FESEEAAKAF YNSYARRVGF STRVSSSRRS RRDGAIIQRQ FVCAKEGFRN LNEKRTKDRE 120 IKRPRTITRV GCKASLSVKM QDSGKWIVSG FVREHNHELV PPDQVHCLRS HRQISGAAKT 180 LIDTLQAAGM GPRRIMSALI KEYGGISKVG FTEVDCRNYM RNNRLRSLEG DIQLVLDYLR 240 QMHAENPNFF YAVQGDEDQS ITNVFWADPK ARMNYTFFGD TVTFDTTYRS NRYRLPFAFF 300 TGVNHHGQPV LFGCAFLINE SEASFVWLFK TWLMAMSGCP PVSITTDHDS AIRSAIIQVF 360 PETRHRFCKW HICQEKLSHI FLQYPNFEAE FHKCVNLTES TEEFKSCWST LVDKYDLRVH 420 EWLQAIYSSC RQWVPVYLRD TFFAEMSITQ RSDSMNSYFD GYINASTNLS QFFKLYEKAL 480 ESRNEKEVRA DYDTMNTLPV LRTPSPMEKQ ASELYTRKIF MRFQEELVGT LALMASKADD 540 DGEVITYHVA KFGEDHKGYC VKFNVLEMKA TCSCQMFEFS GLLCRHVLAV FRVTNVLTLP 600 SHYILKRWTR NAKSNVILEE HACDVYTYYL ESHTVRYNTL RHEALKFVDE GARSAETYDV 660 AIDALQEAAK RVSQGIQNEG KIPISNGKVR SHVLNDESHA NYTSGCQEAS LSQHMSKDDL 720 DKNIRKLMNE LECANRKCEI YRSNLLSVLK AVEDHKLELS VKVENIKISM KDGI

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence Send to blast

MDNEVEVLEF DIGLGGGEGE YDDDDGGGID EEELGVATGG GEIYLPEVDL LDLEPCEGME  60
FESEEAAKAF YNSYARRVGF STRVSSSRRS RRDGAIIQRQ FVCAKEGFRN LNEKRTKDRE  120
IKRPRTITRV GCKASLSVKM QDSGKWIVSG FVREHNHELV PPDQVHCLRS HRQISGAAKT  180
LIDTLQAAGM GPRRIMSALI KEYGGISKVG FTEVDCRNYM RNNRLRSLEG DIQLVLDYLR  240
QMHAENPNFF YAVQGDEDQS ITNVFWADPK ARMNYTFFGD TVTFDTTYRS NRYRLPFAFF  300
TGVNHHGQPV LFGCAFLINE SEASFVWLFK TWLMAMSGCP PVSITTDHDS AIRSAIIQVF  360
PETRHRFCKW HICQEKLSHI FLQYPNFEAE FHKCVNLTES TEEFKSCWST LVDKYDLRVH  420
EWLQAIYSSC RQWVPVYLRD TFFAEMSITQ RSDSMNSYFD GYINASTNLS QFFKLYEKAL  480
ESRNEKEVRA DYDTMNTLPV LRTPSPMEKQ ASELYTRKIF MRFQEELVGT LALMASKADD  540
DGEVITYHVA KFGEDHKGYC VKFNVLEMKA TCSCQMFEFS GLLCRHVLAV FRVTNVLTLP  600
SHYILKRWTR NAKSNVILEE HACDVYTYYL ESHTVRYNTL RHEALKFVDE GARSAETYDV  660
AIDALQEAAK RVSQGIQNEG KIPISNGKVR SHVLNDESHA NYTSGCQEAS LSQHMSKDDL  720
DKNIRKLMNE LECANRKCEI YRSNLLSVLK AVEDHKLELS VKVENIKISM KDGI

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN32934.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028225725.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0B2RKS2	0.0	A0A0B2RKS2_GLYSO; Protein FAR1-RELATED SEQUENCE 5
STRING	GLYMA01G00321.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]