PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN32769.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 336aa MW: 37717.7 Da PI: 6.2606 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.5e-18 | 33 | 83 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y GVr++ +g+WvAeI+d + ++ r +lg++ taeeAa+a+++a+ l+g KHN32769.1 33 SKYVGVRQRA-SGKWVAEIKDTT---QKIRMWLGTYETAEEAARAYDEAACLLRG 83 89*****999.7*********32...35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.33E-32 | 33 | 90 | No hit | No description |
SuperFamily | SSF54171 | 2.35E-19 | 33 | 91 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.9E-13 | 33 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-27 | 34 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-34 | 34 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.427 | 34 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-7 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-7 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MEIQFQHPKQ HLRANTPKGG KVFKGRNNNK TKSKYVGVRQ RASGKWVAEI KDTTQKIRMW 60 LGTYETAEEA ARAYDEAACL LRGSNTRTNF ITRVSLDSPL ASRIQNLLNS RNGTKTKHQE 120 QDVETCHTRI KSNRQESSVA LAEGTCPPQH GELRFESSLE DMSTFSIPPY IDQDCLQKKI 180 LVKNEKRRRV NSTTSTASAS TSNSTNSSNN SDTCENSLSS ETTQNTQQFD DDDDAYRPDL 240 SNFIGSESGS QNNPSWGFEP SSFVHFPFSQ VMDVANLPDI AGLELPDFER MKVERQISAS 300 LYAINGVQEY MDTVTVQDSN NNVAIWDFPP LCSFLC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 25 | 100 | 5 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 189 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN32769.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092344 | 0.0 | BT092344.1 Soybean clone JCVI-FLGm-15F24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028205906.1 | 0.0 | ethylene-responsive transcription factor ERN1-like | ||||
TrEMBL | A0A0B2RKD9 | 0.0 | A0A0B2RKD9_GLYSO; Ethylene-responsive transcription factor ERN2 | ||||
STRING | GLYMA16G27040.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18699 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 5e-24 | related to AP2 11 |
Publications ? help Back to Top | |||
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