PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN32754.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 278aa MW: 31019 Da PI: 8.2674 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.8 | 2.6e-17 | 203 | 237 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + Tp+WR gp g+ktLCnaCG++y++ +l KHN32754.1 203 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 237 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.1E-15 | 197 | 251 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.03E-15 | 199 | 261 | No hit | No description |
PROSITE profile | PS50114 | 11.108 | 201 | 233 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.3E-13 | 201 | 235 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.08E-11 | 202 | 249 | No hit | No description |
Pfam | PF00320 | 5.3E-15 | 203 | 237 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 203 | 228 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MDMDVCRNIS VSSSECQQEL PTLDDLFCHQ NTEVDFGMEW LSVFVEDCFS SRPSCLLPPS 60 GGGVQTTSTS TKPSSGTIMP RPQQSHHCPL QNFAVPGKAR SKRKRLSAPR TTKHTLSTWS 120 QHFSSQNDGV SSDPPLLKQA YWLADSELIV PKKKDVEQEE GVVVVVKKEK LGDYYDDEGD 180 EVNNNNTNNN NNDNVQHPIP RRCTHCLAQR TPQWRAGPLG PKTLCNACGV RYKSGRLLPE 240 YRPAKSPTFV SYLHSNSHKK VMEMRMGVGV AVLSTDKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN32754.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT089250 | 0.0 | BT089250.1 Soybean clone JCVI-FLGm-1B13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028207771.1 | 0.0 | GATA transcription factor 9-like | ||||
TrEMBL | A0A0B2RKC6 | 0.0 | A0A0B2RKC6_GLYSO; GATA transcription factor 9 | ||||
STRING | GLYMA16G26870.1 | 1e-164 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8487 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 1e-34 | GATA transcription factor 4 |
Publications ? help Back to Top | |||
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