PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN32748.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 410aa MW: 46655.3 Da PI: 6.7774 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.3 | 2.4e-56 | 23 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdee++++yL++kv ++ +++ ++i e+d +k+ePwdLpkk+k +ek+wyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ k++l KHN32748.1 23 LPPGFRFHPTDEEIITCYLTEKVLNRAFSA-TAIGEADFNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDKEIFKGKNNL 120 79**************************99.88***************99999*****************************************99*** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfy+grapkgekt+Wvmhe+rl KHN32748.1 121 VGMKKTLVFYRGRAPKGEKTNWVMHEFRL 149 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-61 | 21 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.036 | 23 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-29 | 24 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MMEEPVVVNK GDYDHDHDQP LDLPPGFRFH PTDEEIITCY LTEKVLNRAF SATAIGEADF 60 NKCEPWDLPK KAKMGEKDWY FFCQRDRKYP TGMRTNRATQ SGYWKATGKD KEIFKGKNNL 120 VGMKKTLVFY RGRAPKGEKT NWVMHEFRLD GKFACYNLPK AAKDEWVVCK VFHKSSTTTT 180 DVNKRVLPII NPGLLRMNSS NGEDLLFDFS SLPPLVDPLF DQTSNKHIDN DFKGTNNTPS 240 SSSAKLPSSS GYYLPNFNNN NNQQMLMMKP EEHKIYEIPI NNYASTSQVD FTTTNNPMGI 300 STSNNNILLS QPQIRTQNST SVPFNMFQDC YNHTHQGKQC KMEQFSIDST KKQPVVSASQ 360 DTCLSNDTSS VVSKQDNNMG RNKALYEDNF EGPSSVATTL SDLECLWDDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-51 | 21 | 178 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-51 | 21 | 178 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-51 | 21 | 178 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-51 | 21 | 178 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swm_B | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swm_C | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swm_D | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swp_A | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swp_B | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swp_C | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swp_D | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
4dul_A | 3e-51 | 21 | 178 | 15 | 169 | NAC domain-containing protein 19 |
4dul_B | 3e-51 | 21 | 178 | 15 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN32748.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU661922 | 0.0 | EU661922.1 Glycine max NAC domain protein (NAC23) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001238186.2 | 0.0 | NAC domain protein | ||||
Refseq | XP_028205611.1 | 0.0 | NAC domain-containing protein 87-like | ||||
Swissprot | Q9FK44 | 1e-113 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A0B2RLC1 | 0.0 | A0A0B2RLC1_GLYSO; NAC domain-containing protein 100 | ||||
TrEMBL | I1MNT1 | 0.0 | I1MNT1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G26810.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 1e-109 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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