PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN32681.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 753aa    MW: 88703 Da    PI: 7.962
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN32681.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.86.6e-22114205290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnHela 90 
                 fY++YA++ GFsvrk +  k+  ng + +r+f C +eg+++ +  +  ke+r+r++tr++Cka l+++++k      ++w+vtk++ eHnH l 
  KHN32681.1 114 FYKRYAYQHGFSVRKGRFIKR--NGIMRRRDFFCHREGRSSLKIIEPLKEQRNRESTRCECKAYLRISLQKshdifPSEWRVTKFVVEHNHVLL 205
                 9***************87776..9*9******************999*********************99865555579************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.9E-19114205IPR004330FAR1 DNA binding domain
PfamPF105519.8E-28327418IPR018289MULE transposase domain
PROSITE profilePS509669.916595638IPR007527Zinc finger, SWIM-type
PfamPF044345.5E-7606637IPR007527Zinc finger, SWIM-type
SMARTSM005757.7E-4613640IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MINNTMGEGN TSTRDMSTDK INVDLNEYPI EDISLENGYS GTVSEHFDHD IVANDVLEVE  60
EIETYEKENI VSSSQNIEIN EFAEEVDRDE TYNETNIVPF VGQIFLSEEE AFAFYKRYAY  120
QHGFSVRKGR FIKRNGIMRR RDFFCHREGR SSLKIIEPLK EQRNRESTRC ECKAYLRISL  180
QKSHDIFPSE WRVTKFVVEH NHVLLTQSEV RFLPANRTIS EDDIERIFLL KEGGLSVRQL  240
MRVIELEKNV KHGYLPFIER DIRNLFVKTK KKVERNDAKD LLKYCEDAKK SCSKFQYAYT  300
LDEERRLEHI FWSPASCSDW YQKYGDVVVF DTTYKVNSYE MPFGIFVGMN SHGKTVLFGC  360
ALLRNETISA FRWLMKTFIS LMKKPPKTIL TDQDPWMKEA ISKDLPSTKH SFCIWHITFK  420
FSSWFNAILR DKYSKWCSDF YELYKLETCE EFEHQWPKVV AKYNLQSNKH VKGLYEIRNY  480
WALAYLRDHF FGGMTTTGRS ESINAFIKRF INSHTSLSDF TKQVDVAIDD IKQKEDHDIM  540
LEKCKRINLK LMSPLQEQAH GVLTRFAFQK FQEEFERSTQ YSIHHENGNE FVLRYYKDAN  600
SRKHMVFWDG KIATCSCKYF EFWGILCRHI LSIFLHKDCH EIPSNYLPSR WRLQTSHDDD  660
EVDPQQVNVV FEEQVDVVHC PPPSKTKGRP KRRRLKGGKE LSHNMNTCGL CKDVGHNIVT  720
CPLKENTQFS GHTNKKKKIC KDANLNPILL PKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1690694KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN32681.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5336950.0EF533695.1 Glycine max clone BAC GM_WBb098N15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028201028.10.0protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A0B2RR750.0A0A0B2RR75_GLYSO; Protein FAR1-RELATED SEQUENCE 11
STRINGAES623830.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.11e-174FAR1-related sequence 11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]