PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN32670.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 268aa    MW: 29994.7 Da    PI: 9.1896
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN32670.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.5e-08176216954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r+RR+ri +++  L++++P        K++ a++L +A +Y+k L
  KHN32670.1 176 ARQRRERISERIRVLQKIVPGG-----SKMDTASMLDEAANYLKFL 216
                 69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.021167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-14172232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-12175229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-5176216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.83E-4189221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016787Molecular Functionhydrolase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MILSDCRNLW SNMLASSGES DSNASINARN SDMRYPSVSE LDESVSQSFS DQYLSQVRVI  60
DSEVICTKRS SSSCFSIAQN SSATEGGFRL ISETSPKSKR PRWIHKHPGS SNINFQQPNS  120
SVTPSFEEPD PEVIAQMKEM IYRAAAFRPV NLGLEAVEKP KRKNVRISTD PQTVAARQRR  180
ERISERIRVL QKIVPGGSKM DTASMLDEAA NYLKFLRSQV KALENLGNKL DTMNCPPTNI  240
DFSFNPSFPI QTHFPIQNPS SHIQYSKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN32670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028203730.10.0transcription factor bHLH87-like
SwissprotQ8S3D23e-71BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A445GMT40.0A0A445GMT4_GLYSO; Transcription factor bHLH87
STRINGGLYMA15G02531.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]