PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN32638.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 186aa    MW: 20713.1 Da    PI: 5.3315
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN32638.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-194495156
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                s+y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g+
  KHN32638.1 44 SDYHGVRMRN-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALSIKGH 95
                78*****998.**********843...6************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.81E-184497IPR016177DNA-binding domain
PfamPF008477.5E-134495IPR001471AP2/ERF domain
CDDcd000186.93E-274494No hitNo description
SMARTSM003804.2E-2645114IPR001471AP2/ERF domain
PROSITE profilePS5103220.3545108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-274598IPR001471AP2/ERF domain
PRINTSPR003671.5E-94657IPR001471AP2/ERF domain
PRINTSPR003671.5E-96884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MTETARCHET PSSSTSNSST SKPLKTETPK QSKAKRNRDP TKHSDYHGVR MRNWGKWVSE  60
IREPRKKSRI WLGTFATPEM AARAHDVAAL SIKGHTAAAE AAAMVEFDRE SSEAESTELS  120
EIVELPNIEE SFDSVESRSE FALIDSVDSW VYPPPMTVGS ICDMMMLGEH ECGLFQFGTD  180
HQTCSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1343971267Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN32638.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542090.11e-117dehydration-responsive element-binding protein 3
RefseqXP_028189561.11e-117dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD34e-39DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A445IF121e-116A0A445IF12_GLYSO; Dehydration-responsive element-binding protein 3
TrEMBLI1M5H71e-116I1M5H7_SOYBN; Uncharacterized protein
STRINGGLYMA13G43210.11e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]