PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN32518.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 256aa MW: 27602.9 Da PI: 6.5829

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN32518.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.8	2.4e-13	2	35	12	47
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +v a++ +G++ W++Iar ++ gRt++ +k++w++ KHN32518.1 2 IVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 35 699******.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.5E-4	1	38	IPR001005	SANT/Myb domain
CDD	cd00167	1.14E-8	1	36	No hit	No description
PROSITE profile	PS51294	20.62	1	40	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-15	1	37	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.48E-9	2	38	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-10	2	35	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MIVAAHAIHG NKWAAIARLL PGRTDNAIKN HWNSTLRRRG VGHDTIKLES GSFMEDVSLE 60 KAKASSEDTL SCGDVSLKSS EGRDVSSMEI MDDKSDGKAQ TEGQLHHEVK DPPTLFRPVA 120 RVSAFNVYHS FDGTQPSTSI PRSVSMQGPV LQSSKPDMEF YRALEGIFGD QSVPHQCGHG 180 CCAAPNGRKS ESSLLGPEFI EFSEPPSFPN FELAAIATDI SNLAWLKSGL ESSSVKIMGN 240 TSGRVVSNGS QVHIGH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN32518.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003520943.1	0.0	transcription factor MYB1
Refseq	XP_028224708.1	0.0	transcription factor MYB1-like
Swissprot	Q42575	1e-71	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A0B2RKN0	0.0	A0A0B2RKN0_GLYSO; Myb-like protein A
STRING	GLYMA03G15810.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3986	33	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	4e-74	myb domain protein 1

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]