PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN32361.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 144aa MW: 15900.3 Da PI: 9.7156 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.2 | 1.9e-05 | 33 | 72 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R ++i +++ L++l+ + +K + +++L++A+eYI L KHN32361.1 33 KERKEKIGERIVALQQLVSPY-----GKTDTSSVLKEAMEYIGFL 72 789999************999.....9***************887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.6E-10 | 22 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.655 | 23 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.03E-11 | 24 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0029 | 29 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.33E-5 | 33 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MMEHKRRPCS VDQSSYTSIA SKRQKADLSI STKERKEKIG ERIVALQQLV SPYGKTDTSS 60 VLKEAMEYIG FLHKQVKLLS APYLESSPAA KMQGVEPCSL RSRGLCLVPV SVTIGVAESN 120 GADIWAPIKT TTSPKFEKDV SQFH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN32361.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031098 | 0.0 | KT031098.1 Glycine max clone HN_CCL_42 bHLH transcription factor (Glyma02g15520.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235597.1 | 1e-103 | uncharacterized LOC100527660 | ||||
Refseq | XP_028205467.1 | 1e-103 | transcription factor bHLH153-like isoform X1 | ||||
Swissprot | Q7XJU2 | 7e-59 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A0B2RD65 | 1e-102 | A0A0B2RD65_GLYSO; Transcription factor bHLH113 | ||||
TrEMBL | A0A445LNQ0 | 1e-101 | A0A445LNQ0_GLYSO; Transcription factor bHLH153 isoform A | ||||
TrEMBL | C6T509 | 1e-101 | C6T509_SOYBN; BHLH transcription factor | ||||
STRING | GLYMA02G15520.1 | 1e-102 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10813 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 3e-61 | bHLH family protein |
Publications ? help Back to Top | |||
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