PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN32341.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 272aa MW: 29698.8 Da PI: 7.3973 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.4e-12 | 75 | 121 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P+ +K++Ka+ L +++ +k+L KHN32341.1 75 KNHSEAERRRRERINGHLATLRGLVPST-----EKMDKATLLAEVISQVKEL 121 58*************************8.....8**********99988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.44 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-9 | 75 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-13 | 76 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-13 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.2E-12 | 78 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 7.25E-5 | 161 | 229 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MVYSFYDKTS SSSSGSDISG LFNPTLHNLG ACNDLSSSPH SLVFESDKGE LVKCLAAAKV 60 GKSEICEAKA LAALKNHSEA ERRRRERING HLATLRGLVP STEKMDKATL LAEVISQVKE 120 LKKNAAEVSK GFLIPKDADE VKVEPYNDHE GGEGSMSYSA TICCDFRPEI LSDLRQTLDS 180 LPLHLVKAEI STLAGRMKNV FVFTCCKENI NNIDFEKCQA LASTVHQALC SVMEKASASL 240 DFSPRTSHAS KRRRLCFIET SNSTCNHGSC LC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 85 | ERRRRE |
2 | 250 | 254 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN32341.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031099 | 0.0 | KT031099.1 Glycine max clone HN_CCL_46 bHLH transcription factor (Glyma02g15780.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028205831.1 | 0.0 | transcription factor bHLH30-like | ||||
TrEMBL | A0A0B2RD48 | 0.0 | A0A0B2RD48_GLYSO; Transcription factor bHLH30 | ||||
STRING | GLYMA02G15780.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8986 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 4e-39 | bHLH family protein |
Publications ? help Back to Top | |||
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