PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN32134.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 687aa    MW: 77367.7 Da    PI: 5.9417
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN32134.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.42.8e-1143196843373
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +lL++cA+av+s d++ a+++L+++++++sp gd +qRla+yf+ +L++rla    ++ k ++ +++s    ++ l+a++++  +sP+l++s+++aN++
  KHN32134.1 319 TLLIQCAQAVASFDQRTANETLKQIRQHSSPFGDGLQRLAHYFADGLEKRLAA---GTPKFISFQSAS---AADMLKAYRVYISASPFLRMSNFLANRT 411
                 69**************************************************9...555556666666...899************************* PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 Il+ +++e+ +HiiDf+is+G+QWp+L+q L++Rp+gpp+l +Tg++ p++g   +e++eetg+ L+k+++++gvpfe+n  +a+++e+++le+L++++
  KHN32134.1 412 ILKLAQNESSLHIIDFGISYGFQWPCLIQRLSERPGGPPKLLMTGIDLPQPGfrPAERVEETGRWLEKYCKRFGVPFEYNC-LAQKWETIRLEDLKIDR 509
                 ***************************************************9*****************************.6**************** PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                  E+++Vn+ ++l++l de+v+ + +rd++L+l+++++P+++ +   +  +n++ F++rf eal ++s+lfd++e+++pre+  r ++E+ ++gr++ nv
  KHN32134.1 510 SEVTVVNCLYRLKNLSDETVTANCPRDALLRLIRRINPNIFMHGVVNGTYNAPFFVTRFREALFHFSSLFDMFEVNVPREDPSRLMIEKGVFGRDAINV 608
                 *************************************************************************************************** PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 +acegaer+er et+++W+ r ++aGFk++pl  + ++ +k +++k + + + v+e+ +++++gWk+r L++vS+W
  KHN32134.1 609 IACEGAERVERPETYKQWQVRNQRAGFKQLPLAPEHVNRVKEMVKKEHHKDFVVDEDGKWVLQGWKGRILFAVSSW 684
                 ************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.69291665IPR005202Transcription factor GRAS
PfamPF035149.8E-112319684IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MLSTDSLLEN FPGSVNGFIF ENGPVSVFSN QNPASGFEVD DSVSPSESAT DSGPSSGASS  60
NREHVESTKH SNPILRYISD ILMDEEDDLE RKPCMLQDCL RLQAAEKSFY DALVRSYPSS  120
PRQFDDNPDQ DDNFGGTTSS ESFSSYTTDN SCESDWFNGA SDFDSSFIQR SLIYSPEHAY  180
VAPDPFRETQ AGVHFSNGAW NLIHPQNKPR VIEDGVMQGS VTATGLREKR SYLMNDMSHE  240
EERSNKLSSV YSDDSEPSSM FDEVLLCKDG KSPSIFYAGR EPSPSQIADS GGSNGKKTRS  300
KRGSNKGTRA SVTTVDLWTL LIQCAQAVAS FDQRTANETL KQIRQHSSPF GDGLQRLAHY  360
FADGLEKRLA AGTPKFISFQ SASAADMLKA YRVYISASPF LRMSNFLANR TILKLAQNES  420
SLHIIDFGIS YGFQWPCLIQ RLSERPGGPP KLLMTGIDLP QPGFRPAERV EETGRWLEKY  480
CKRFGVPFEY NCLAQKWETI RLEDLKIDRS EVTVVNCLYR LKNLSDETVT ANCPRDALLR  540
LIRRINPNIF MHGVVNGTYN APFFVTRFRE ALFHFSSLFD MFEVNVPRED PSRLMIEKGV  600
FGRDAINVIA CEGAERVERP ETYKQWQVRN QRAGFKQLPL APEHVNRVKE MVKKEHHKDF  660
VVDEDGKWVL QGWKGRILFA VSSWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-4732368625380Protein SCARECROW
5b3h_A4e-4732368624379Protein SCARECROW
5b3h_D4e-4732368624379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN32134.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592195.20.0uncharacterized protein LOC100815586
SwissprotQ9XE581e-177SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0B2RII60.0A0A0B2RII6_GLYSO; Scarecrow-like protein 14
TrEMBLK7LTB40.0K7LTB4_SOYBN; Uncharacterized protein
STRINGGLYMA12G06630.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-173SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]