PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN32133.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 694aa    MW: 78839.5 Da    PI: 5.1112
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN32133.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.83.6e-1133086771373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL+ c + v ++d+++a++lL+++++++sp+gd++qRla+yf+++L+arl++  +++++ l++++++    +e l+a++ f  vsP+ kf+++ aN
  KHN32133.1 308 LRNLLMMCSQSVYANDKRAANELLEQIRQHSSPSGDALQRLAHYFANGLEARLVG--EGMFSFLKSKRST---AAEFLKAHQDFLSVSPFKKFTYFFAN 401
                 689***************************************************9..9999999999888...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 ++I++a+ ++e+vHiiDf+i++G+QWp L++ L++R++gpp+lRiTg++ p++g   +e++eetg rLa++ ++  +pfe+n+++++++e++++e+L++
  KHN32133.1 402 KMIMKAAVKAETVHIIDFGIQYGFQWPMLIKFLSNREGGPPKLRITGIDFPQPGfrPTEKIEETGCRLANYSKRYSIPFEYNAIASRNWETIQVEALNI 500
                 *****************************************************9*****************************9999************ PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +++E +aVn+ ++ ++l+de+ +++s+r++vL+l+++++P++++ +  +  +n++ F +rf eal ++s+++d  ++ +pre+e+r+ +Ere++gre++
  KHN32133.1 501 ETNELVAVNSLMKFENLMDETIEVDSPRNAVLHLIRKINPHIFTQCIVNGTYNAPFFTTRFREALFHFSTIYDLCDTVIPRENEWRMLIEREVIGREAM 599
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 nv+aceg+er+er et+++W++r ++aGFk++pl+e+  ++ +  lrk + + + ++e+++++++gWk+r L++ ++W
  KHN32133.1 600 NVIACEGSERVERPETYKQWQARNMKAGFKQLPLNEELLAKFRNELRKSYHRDFVLDEDKNWMLQGWKGRILYASTCW 677
                 **************************************************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.579282658IPR005202Transcription factor GRAS
PfamPF035141.2E-110308677IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MEANFPRRAH QFGEEEESIL YVSDSLGFAA TDPSLRDPSL EDNDFSETAK FINQILMEDN  60
VEQMPFYDSI NLQVTEKSFY NALTGNIPLS PNQHPLVLSP QAETTPTTSN SSNNSNHNFL  120
DENSRELNPS PDSVSVLAFQ FNPNSLSQPP SVTVNHGLSN LDSSTAKLLA HNIFNDADSL  180
SQFRRGLEEA TRFLPPGPKL VAGLDSKGEQ PINTLGENSY GSKGRKNHER EDTDTREEEE  240
RRSNKQSALS LVDESDLSDA FDRVVLLSVE NVCNEHCSLQ SETVKAVEPG GVKGRPKNQA  300
TNKETVDLRN LLMMCSQSVY ANDKRAANEL LEQIRQHSSP SGDALQRLAH YFANGLEARL  360
VGEGMFSFLK SKRSTAAEFL KAHQDFLSVS PFKKFTYFFA NKMIMKAAVK AETVHIIDFG  420
IQYGFQWPML IKFLSNREGG PPKLRITGID FPQPGFRPTE KIEETGCRLA NYSKRYSIPF  480
EYNAIASRNW ETIQVEALNI ETNELVAVNS LMKFENLMDE TIEVDSPRNA VLHLIRKINP  540
HIFTQCIVNG TYNAPFFTTR FREALFHFST IYDLCDTVIP RENEWRMLIE REVIGREAMN  600
VIACEGSERV ERPETYKQWQ ARNMKAGFKQ LPLNEELLAK FRNELRKSYH RDFVLDEDKN  660
WMLQGWKGRI LYASTCWVPA YQDANELASE LIVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-502916791379Protein SCARECROW
5b3h_D8e-502916791379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN32133.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028193524.10.0scarecrow-like protein 14 isoform X1
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0B2RJJ80.0A0A0B2RJJ8_GLYSO; Scarecrow-like protein 14
STRINGGLYMA12G06640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]