PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN32045.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 331aa MW: 37137.1 Da PI: 8.3038

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN32045.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.1	4.8e-55	5	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL++kv++++++ ++i+ vd++k+ePwdLp k++ ++kewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke+++ g l KHN32045.1 5 LPPGFRFHPTDEELITCYLTRKVSDSSFTS-KAIAVVDLNKSEPWDLPGKASMGKKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFR-AGVL 101 79***********************999.88***********9888999************************************.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfy+grap+gek++Wvmheyrle KHN32045.1 102 VGMKKTLVFYRGRAPRGEKSNWVMHEYRLE 131 ****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-63	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	59.945	5	151	IPR003441	NAC domain
Pfam	PF02365	6.8E-29	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MEENLPPGFR FHPTDEELIT CYLTRKVSDS SFTSKAIAVV DLNKSEPWDL PGKASMGKKE 60 WYFFSLRDRK YPTGLRTNRA TESGYWKTTG KDKEIFRAGV LVGMKKTLVF YRGRAPRGEK 120 SNWVMHEYRL ENKNHFRPSK DEWVVCRVFQ KSLQMKRPQQ TPPSQPESPC DTASMVNEFG 180 DVELPNLINN IANSSSDGIT NNISGQTFFN ADLINSVNTN MNLTMNWPVA SEVIQVPTLP 240 SLPWPSGLLN PSISVNSLLL KALQLRSYQQ IEAAAAAATD HLIASYMPQG VSQHVGTNLI 300 SSSLTASSSS KVLECVPQQQ QEQPFNLDSI W

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-56	4	151	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-56	4	151	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-56	4	151	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-56	4	151	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	8e-56	4	151	19	168	NAC domain-containing protein 19
3swm_B	8e-56	4	151	19	168	NAC domain-containing protein 19
3swm_C	8e-56	4	151	19	168	NAC domain-containing protein 19
3swm_D	8e-56	4	151	19	168	NAC domain-containing protein 19
3swp_A	8e-56	4	151	19	168	NAC domain-containing protein 19
3swp_B	8e-56	4	151	19	168	NAC domain-containing protein 19
3swp_C	8e-56	4	151	19	168	NAC domain-containing protein 19
3swp_D	8e-56	4	151	19	168	NAC domain-containing protein 19
4dul_A	9e-56	4	151	16	165	NAC domain-containing protein 19
4dul_B	9e-56	4	151	16	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN32045.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028180134.1	0.0	NAC domain-containing protein 100-like isoform X1
TrEMBL	A0A0B2RFF4	0.0	A0A0B2RFF4_GLYSO; NAC domain-containing protein 100 isoform A
STRING	GLYMA09G31650.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4946	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-112	NAC domain containing protein 58

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]