PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN31934.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 25357.7 Da PI: 8.116 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 126 | 176 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ +r++lg+f+++ +Aaka++ a+ k++g KHN31934.1 126 RYRGVRRRP-WGKFAAEIRDPTRK--GTRVWLGTFDSEIDAAKAYDCAAFKMRG 176 8********.**********8542..4**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.04E-30 | 125 | 184 | No hit | No description |
PROSITE profile | PS51032 | 24.316 | 126 | 184 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-22 | 126 | 185 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.0E-13 | 126 | 176 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-31 | 126 | 185 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-35 | 126 | 190 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-13 | 127 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-13 | 166 | 186 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
LTTILFHHSD PLKMTTAEET SNLDLIRQHL LGENIISDSS FFSNLLHHPM KLEAPSSPEF 60 DFTSYISDNT SFFTFLEGYD LMADMKFVDS DNTIPSKEVK KCNISPEPLV SSKEKPKKLE 120 YDKAKRYRGV RRRPWGKFAA EIRDPTRKGT RVWLGTFDSE IDAAKAYDCA AFKMRGQKAI 180 LNFPLEAGLS DPKPNSCGRK RRRESHDHEL ELPQVQVHHG VS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-28 | 123 | 185 | 2 | 64 | ATERF1 |
3gcc_A | 1e-28 | 123 | 185 | 2 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 198 | 202 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN31934.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT089482 | 0.0 | BT089482.1 Soybean clone JCVI-FLGm-2G11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235847.2 | 1e-156 | DNA-binding domain-containing protein | ||||
Refseq | XP_028220065.1 | 1e-156 | ethylene-responsive transcription factor ERF107-like | ||||
TrEMBL | A0A0B2RHZ0 | 1e-165 | A0A0B2RHZ0_GLYSO; Ethylene-responsive transcription factor ERF106 (Fragment) | ||||
STRING | GLYMA20G16920.1 | 1e-155 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 1e-43 | ERF family protein |
Publications ? help Back to Top | |||
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