PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31894.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 277aa    MW: 31425.4 Da    PI: 4.66
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31894.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12100145555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h + Er+RR+++ s+f  L   +P +     kK++Ka +L++A++Y+k+Lq
  KHN31894.1 100 HIMSERNRRQELTSKFIALAATIPGL-----KKMDKAHVLREAINYVKQLQ 145
                 8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.61595144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-16100161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-10100149No hitNo description
Gene3DG3DSA:4.10.280.101.8E-15100156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-10100145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-13101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDDEDVNESL RETNQFDEEF LRDILQQPEE GSEDLKNSSI MSSLFPTTYI LSFDKSAAEL  60
LPTETDHRDY SSSQLPSSSN SRANHGTNKK PRSASESLDH IMSERNRRQE LTSKFIALAA  120
TIPGLKKMDK AHVLREAINY VKQLQERIEE LEEDIRKNGV ESAITIIRSH LCIDDDSNTD  180
EECYGPNEAL PEVEARVLGK EVLIKIYCGK QKGILLKIMS QLERLHLYIS TSNVLPFGNT  240
LDITITAQMG DKYNLVVNDL VKELRQVAMM KSCDVQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31894.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937070.0BT093707.1 Soybean clone JCVI-FLGm-14A22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028188787.10.0transcription factor bHLH18-like isoform X1
RefseqXP_028188788.10.0transcription factor bHLH18-like isoform X2
TrEMBLA0A0B2RHV30.0A0A0B2RHV3_GLYSO; Transcription factor bHLH25
TrEMBLA0A445IG400.0A0A445IG40_GLYSO; Transcription factor bHLH25 isoform A
STRINGGLYMA13G44570.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15398711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-48bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]