PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31892.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 422aa    MW: 47419.6 Da    PI: 4.7457
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31892.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12106151555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h ++Er+RR+++ ++f  L   +P +     kK +K++iL +A++Y+k+Lq
  KHN31892.1 106 HIMAERKRRQELTQKFIALSATIPGL-----KKTDKSSILGEAIDYVKQLQ 151
                 999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.027101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-16103168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16106165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.53E-11106154No hitNo description
PfamPF000104.6E-10106151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-13107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.40.1090.109.3E-18255365No hitNo description
SuperFamilySSF521511.62E-5255369IPR016035Acyl transferase/acyl hydrolase/lysophospholipase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MEQSWENWPL DMGMEEDRDL RDEEEFLRNI LSEPSESEMV TVGSAKRPPR TYILSFDNST  60
IIPATPEPTS RKRTRQPQNL NLEPIKPNPN TQPGKRGRSC SQTLDHIMAE RKRRQELTQK  120
FIALSATIPG LKKTDKSSIL GEAIDYVKQL QERVTELEQR NMRGKESMII LKKSEVCNSS  180
ETNSEDCCRA SEMLPDVEAR VMENEVLIEI HCEKEDGVEL KILDHLENLQ LCVTASSVLP  240
FGNSTLGITI IAQAPTFTPF HFSSIDEKIS CVVVDGGLVM NNPAVAVVTH VLHNKCDFPS  300
VNGMEDLLVL SIGNRAQAKR MNNAGECSTS TVVDIALDGV FETTDQMLGN AFCWNRTDYV  360
RIQDEEILHA VHRWEIVLVV EDVRDGSCCQ IVHHQAIVDG GEVEGSEEAR GRRRCEVRSS  420
QQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109114ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31892.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0985346e-85BT098534.1 Soybean clone JCVI-FLGm-12J15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595181.10.0transcription factor bHLH25
RefseqXP_028188261.10.0transcription factor bHLH25-like
TrEMBLA0A0B2RJ900.0A0A0B2RJ90_GLYSO; Putative inactive patatin-like protein 9
STRINGGLYMA13G44594.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131101230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-40bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]