PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31772.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Whirly
Protein Properties Length: 266aa    MW: 29611.6 Da    PI: 9.6417
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31772.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly202.36.3e-63902281139
      Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99 
                 s+yk+kaal++ ++ p+f  ldsg+ k++++G +ll++a+a+++r+ydW++kq+f+ls+ e++++++l++++s effhdp++++s+eGkvrk lkvePl
  KHN31772.1  90 SIYKGKAALTLTPRPPEFMPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVGEMGSVISLGARDSYEFFHDPFKGKSDEGKVRKFLKVEPL 188
                 7************************************************************************************************** PP

      Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                 pdGsG+f+nlsv+n+lv+++es+++Pv+kae avl s ++
  KHN31772.1 189 PDGSGHFFNLSVQNKLVNVDESIYIPVTKAELAVLTSTFN 228
                 ***********************************99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.107.9E-7679249IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.82E-7583266IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.0E-6091225IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009570Cellular Componentchloroplast stroma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSNLQLQIHS PTPSLLSYSS SSLSSSSSLK LFPNHPFSSK SLPFNTPKPF SLRCRHSDLF  60
DQNTLASTPR PTRPSASVGA LPPRVYVGYS IYKGKAALTL TPRPPEFMPL DSGAYKISKE  120
GYVLLQFAPA VGTRQYDWNR KQVFSLSVGE MGSVISLGAR DSYEFFHDPF KGKSDEGKVR  180
KFLKVEPLPD GSGHFFNLSV QNKLVNVDES IYIPVTKAEL AVLTSTFNFI MPYLLGWHTF  240
ANSIKPEDNG VNDANPRYGG DYEWNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A1e-1047926532219p24: plant transcriptional regulator PBF-2
1l3a_B1e-1047926532219p24: plant transcriptional regulator PBF-2
1l3a_C1e-1047926532219p24: plant transcriptional regulator PBF-2
1l3a_D1e-1047926532219p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31772.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028212582.10.0single-stranded DNA-binding protein WHY1, chloroplastic-like
SwissprotQ9LL851e-112WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A0B2RIZ50.0A0A0B2RIZ5_GLYSO; Single-stranded DNA-binding protein WHY1, chloroplastic isoform A
STRINGGLYMA08G40850.11e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64163251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-113ssDNA-binding transcriptional regulator
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]