PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN31772.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Whirly | ||||||||
Protein Properties | Length: 266aa MW: 29611.6 Da PI: 9.6417 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 202.3 | 6.3e-63 | 90 | 228 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99 s+yk+kaal++ ++ p+f ldsg+ k++++G +ll++a+a+++r+ydW++kq+f+ls+ e++++++l++++s effhdp++++s+eGkvrk lkvePl KHN31772.1 90 SIYKGKAALTLTPRPPEFMPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVGEMGSVISLGARDSYEFFHDPFKGKSDEGKVRKFLKVEPL 188 7************************************************************************************************** PP Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 pdGsG+f+nlsv+n+lv+++es+++Pv+kae avl s ++ KHN31772.1 189 PDGSGHFFNLSVQNKLVNVDESIYIPVTKAELAVLTSTFN 228 ***********************************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 7.9E-76 | 79 | 249 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 2.82E-75 | 83 | 266 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.0E-60 | 91 | 225 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MSNLQLQIHS PTPSLLSYSS SSLSSSSSLK LFPNHPFSSK SLPFNTPKPF SLRCRHSDLF 60 DQNTLASTPR PTRPSASVGA LPPRVYVGYS IYKGKAALTL TPRPPEFMPL DSGAYKISKE 120 GYVLLQFAPA VGTRQYDWNR KQVFSLSVGE MGSVISLGAR DSYEFFHDPF KGKSDEGKVR 180 KFLKVEPLPD GSGHFFNLSV QNKLVNVDES IYIPVTKAEL AVLTSTFNFI MPYLLGWHTF 240 ANSIKPEDNG VNDANPRYGG DYEWNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 1e-104 | 79 | 265 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 1e-104 | 79 | 265 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 1e-104 | 79 | 265 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 1e-104 | 79 | 265 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN31772.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028212582.1 | 0.0 | single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
Swissprot | Q9LL85 | 1e-112 | WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A0B2RIZ5 | 0.0 | A0A0B2RIZ5_GLYSO; Single-stranded DNA-binding protein WHY1, chloroplastic isoform A | ||||
STRING | GLYMA08G40850.1 | 1e-170 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6416 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 1e-113 | ssDNA-binding transcriptional regulator |
Publications ? help Back to Top | |||
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