PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31500.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 728aa    MW: 82153.2 Da    PI: 6.0663
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31500.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.63.3e-1123557261374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL+ cA+av+++d+++a++lL++++++++p gd +qRla+ f+ +L+arla+++s++yk l  ++ts    ++ l+a++l+  ++P+ k+s +t N
  KHN31500.1 355 LRTLLFLCAQAVAADDHRNANELLKHIRQHSTPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVGKRTS---AANYLKAYHLYLAACPFRKISKFTSN 450
                 5789*************************************************************99999...899*********************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  +I e+ +++ +vH+iDf+i +G+QWp+++q L+ R++gpp+lRiTg++ p++g   +e++ etg+rLa +Ae+++vpfe+++ +ak++++++leeL++
  KHN31500.1 451 ITIRESSAQSMKVHVIDFGIFYGFQWPTFIQRLSWRAGGPPKLRITGIDFPQPGfrPAERILETGRRLAAYAEAFNVPFEYKA-IAKKWDTIQLEELEI 548
                 *****************************************************9*****************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +++E l+V + ++ ++lldesv ++s+r+++L l+++++Pk++++   +   +++ F++rf eal +ys+lfd+le+ +pre+ er+ +E+e++gre+ 
  KHN31500.1 549 DRDEFLVVTCFYRGKNLLDESVVVDSPRNNFLTLIRRINPKLFIHGIMNGAFDAPFFVTRFREALFHYSSLFDMLETIVPREDWERMLIEKEIFGREAL 647
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nv+aceg er+er e++++W++r+ +aGF + +++ +++k a   +r  + + + ++e+s++l++gWk+r ++++S+Wr
  KHN31500.1 648 NVIACEGPERVERPESYKQWQARILRAGFVQQSFDRRTVKMAMEKVRGSYHKDFVIDEDSQWLLQGWKGRIIYALSCWR 726
                 **************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.923329706IPR005202Transcription factor GRAS
PfamPF035141.2E-109355726IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MNPHLTGFSG STNQSFPILQ NQRFDNGPRF ENLFFDQSRN FDLQCDPNLI PANTPSSSTV  60
THEEHSPEDC DFSDAVLSYI SQILMEEDLE DNTCMVQDSL DIQAAEKSFY EVLGEKYPPS  120
PRNTSLMNDG VGGYDFSGDY GNCPDTNGDL MSIFTNQFLP PNSGSFPAHS LHGDGISHSS  180
YNPSNSVEGL VNSSKSIIQV PDLNSESESI WQFQKGVEEA SKFLPSANGL FANLSEPEPK  240
EGKDELSFKV EKEEGEYVNG GSKGRKHPQI DEADDEENRS SKQAAIYSEP TLRSDMADII  300
LLHSTGDGKD HFVARREALQ NKTQKSVLPK GQSKASSSGK GRGKKQGGRK EVVDLRTLLF  360
LCAQAVAADD HRNANELLKH IRQHSTPFGD GNQRLAHIFA DGLEARLAGT GSQIYKGLVG  420
KRTSAANYLK AYHLYLAACP FRKISKFTSN ITIRESSAQS MKVHVIDFGI FYGFQWPTFI  480
QRLSWRAGGP PKLRITGIDF PQPGFRPAER ILETGRRLAA YAEAFNVPFE YKAIAKKWDT  540
IQLEELEIDR DEFLVVTCFY RGKNLLDESV VVDSPRNNFL TLIRRINPKL FIHGIMNGAF  600
DAPFFVTRFR EALFHYSSLF DMLETIVPRE DWERMLIEKE IFGREALNVI ACEGPERVER  660
PESYKQWQAR ILRAGFVQQS FDRRTVKMAM EKVRGSYHKD FVIDEDSQWL LQGWKGRIIY  720
ALSCWRPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4836272726380Protein SCARECROW
5b3h_A1e-4836272725379Protein SCARECROW
5b3h_D1e-4836272725379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2361700.0AC236170.2 Glycine max clone GM_WBb0073J13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522103.20.0scarecrow-like protein 9
RefseqXP_028224607.10.0scarecrow-like protein 9
RefseqXP_028224608.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A445L8E20.0A0A445L8E2_GLYSO; Scarecrow-like protein 9 isoform A
TrEMBLI1JLK00.0I1JLK0_SOYBN; Uncharacterized protein
STRINGGLYMA03G10320.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein