PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31454.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 308aa    MW: 35485.6 Da    PI: 9.5053
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31454.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.85.5e-20241061199
                 HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 + s  l +p +f++ ++g+   + ++tl d + +sW+v+l  +k+ g  v+++GW++F+k++ L++gDf+vF++dgrs+f  +vk+f+k
  KHN31454.1  24 TGSTKLQIPTSFTKFFNGV--LPLKVTLVDHDRKSWDVYL--EKTEGCLVFKDGWQQFAKEKVLEDGDFLVFQYDGRSTF--NVKIFSK 106
                 3444599******999999..7889***************..***999****************************9999..****998 PP
2B337.54.3e-122152981698
                 EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..EEEEE- CS
          B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelvvkvfr 98 
                 + +p++ +++ ++k     +++l+de+g+ W   +i  kk  r++l++GW++F ++ +++egD + F+  +d+    +el+v+v++
  KHN31454.1 215 VEIPRSVLRKTNIK--LMSKISLRDENGKLWPASIISIKKEYRHFLGGGWNDFRRSYNIQEGDRCDFEfvVDKAnAAQELLVRVRS 298
                 67999999988766..4458****************999999**************************433344567778888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-2114109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.01514107IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-2215109IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-1716107IPR003340B3 DNA binding domain
CDDcd100171.32E-1816105No hitNo description
PfamPF023629.4E-1816106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-13199285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-14200282IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.4E-6202300IPR003340B3 DNA binding domain
CDDcd100177.01E-9211282No hitNo description
PfamPF023622.9E-10214298IPR003340B3 DNA binding domain
PROSITE profilePS5086311.223217298IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MESALPSHGD KSLQEFFKVF LLRTGSTKLQ IPTSFTKFFN GVLPLKVTLV DHDRKSWDVY  60
LEKTEGCLVF KDGWQQFAKE KVLEDGDFLV FQYDGRSTFN VKIFSKTGCR KVAAPASSAK  120
IEPTVILDED SDQRCSKEIQ CGRKRKQSPP SLKTNEESVL EGPCPSEGAR FKSKRVYEEK  180
DDHNEKKPDP TKCVPLQNSH HFQIYFNAPW RLKKVEIPRS VLRKTNIKLM SKISLRDENG  240
KLWPASIISI KKEYRHFLGG GWNDFRRSYN IQEGDRCDFE FVVDKANAAQ ELLVRVRSKC  300
SFGWVDCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A6e-1471092104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31454.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006577282.10.0putative B3 domain-containing protein At5g66980
RefseqXP_028226689.10.0putative B3 domain-containing protein At5g66980
TrEMBLA0A0B2RGJ80.0A0A0B2RGJ8_GLYSO; Putative B3 domain-containing protein
TrEMBLK7KGV50.0K7KGV5_SOYBN; Uncharacterized protein
STRINGGLYMA03G40651.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-35B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]