PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN31427.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 218aa MW: 24699.6 Da PI: 9.573 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 24.1 | 1.2e-07 | 12 | 95 | 7 | 90 |
FAR1 7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 A+e GF ++ +s ++ g+ C ++g+ + ++k+ r+ + + ++gC +l+ k + + w+v+ + HnHela KHN31427.1 12 AHENGFVAVIMRSDTEtGSRGRSSFVLIGCERSGTYKCRNKE--FVRKDTGSRKCGCPFRLRGKPVRgGEGWMVKLICGIHNHELA 95 8999**99999988872344444455556*********9988..8999999*************9998999*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.6E-5 | 12 | 95 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.9E-9 | 178 | 217 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
RDDVLQWART VAHENGFVAV IMRSDTETGS RGRSSFVLIG CERSGTYKCR NKEFVRKDTG 60 SRKCGCPFRL RGKPVRGGEG WMVKLICGIH NHELAKSLVG HPYAGRLTKE EKKIIADMTK 120 SMVKPKNILL TLKEHNADSY TTIKQIYNAR SAYHEVVVCD LFWCHPDAVK LCNACHLVFF 180 IDSTYKTNRY RLPLLDFVGV TPTAMTFSAG FAYLEAER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN31427.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235118 | 0.0 | AC235118.1 Glycine max strain Williams 82 clone GM_WBa0027P10, complete sequence. | |||
GenBank | AC235218 | 0.0 | AC235218.1 Glycine max strain Williams 82 clone GM_WBb0021C10, complete sequence. | |||
GenBank | AC235256 | 0.0 | AC235256.1 Glycine max strain Williams 82 clone GM_WBb0037K19, complete sequence. | |||
GenBank | AC235404 | 0.0 | AC235404.1 Glycine max strain Williams 82 clone GM_WBb0124F21, complete sequence. | |||
GenBank | AC235864 | 0.0 | AC235864.2 Glycine max clone GM_WBb0106P01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006598422.1 | 1e-130 | protein FAR1-RELATED SEQUENCE 4-like | ||||
TrEMBL | A0A0B2RHZ3 | 1e-163 | A0A0B2RHZ3_GLYSO; Uncharacterized protein (Fragment) | ||||
STRING | XP_004507516.1 | 5e-81 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF180 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 4e-06 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
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