PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN31410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 413aa MW: 45539.2 Da PI: 9.1957 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.6e-17 | 156 | 205 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g KHN31410.1 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDRAAIKFRG 205 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.33E-12 | 156 | 212 | No hit | No description |
SuperFamily | SSF54171 | 4.77E-16 | 156 | 214 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-9 | 156 | 205 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.7E-32 | 157 | 219 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.794 | 157 | 213 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-17 | 157 | 214 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MAMFDLNVDI NHGDADADSS CDQKGLQLQS FPPEISASRT ANSSVWNPAE DDSSNNSSPL 60 IFDILKKERD KSEFDAATER VNKEAEIVTR TLFPVTAAAA ADNGARVPDF KLGLWGKTQC 120 LNLCLPEPDG QNGLRTLQQK LPHVRKNRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ 180 VYLGGFDTAQ AAARAYDRAA IKFRGVEADI NFSLSDYEED LKQMRGLSKE EFVLLLRRQI 240 NGSSRSSTYK GALALRKDAQ GEPRRAPFIG KTFYPNSSIK CDDGKVDASF KPCSYKGEII 300 ANSSMAGTSH NLDLSLGISP SSKRLKNDYS GGYSFGCMAS LACKIPKERG TMEKAMVDRI 360 RNVPLQKISN LAWQLCSNGS SIVPRPLQPN AASSGFVSSS SCLITDTSNQ HKY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN31410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031071 | 0.0 | KT031071.1 Glycine max clone HN_CCL_188 AP2-EREBP transcription factor (Glyma02g09600.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003535179.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 | ||||
Refseq | XP_028183212.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 | ||||
Swissprot | B8B0I8 | 1e-52 | AP24_ORYSI; APETALA2-like protein 4 | ||||
TrEMBL | A0A0B2RDF8 | 0.0 | A0A0B2RDF8_GLYSO; Floral homeotic protein APETALA 2 | ||||
TrEMBL | K7LIT0 | 0.0 | K7LIT0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G22390.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15652 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.2 | 2e-52 | related to AP2.7 |
Publications ? help Back to Top | |||
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