PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN31290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 275aa MW: 30627.1 Da PI: 9.3365 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.3e-12 | 89 | 135 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN +++Lr+l+Pk+ K++Ka+ L +++ +k+L KHN31290.1 89 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDQVKDL 135 79*************************8.....7***********9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.046 | 86 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-10 | 89 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.9E-14 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-12 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.82E-9 | 89 | 138 | No hit | No description |
SMART | SM00353 | 1.2E-10 | 92 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00357 | 182 | 217 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MGDKRLRNHG RNFRMVSIVT MENYYDSGWH MGNSSWAQCS DHSSSSFAVP IQILPHHVTD 60 SASLQFGEFH SWPLPIEGAA EERAISASKS HSQAEKRRRD RINAQLATLR KLIPKSDKMD 120 KAALLGSVID QVKDLKRKAM DVSRAFTVPT EIDEVSIDYD HVQDESCTKV NKQKDNIVIK 180 ASVCCDDRPE LFPELIQVLK GLRLTAVKAD IASVGGRIKS ILVLCSKDRE DSVCLATLKQ 240 SLKSAVTKIA SSSMASSCPA RSKRQRFFLP SHCLQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN31290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT089476 | 0.0 | BT089476.1 Soybean clone JCVI-FLGm-2E23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028213084.1 | 0.0 | transcription factor bHLH51-like | ||||
TrEMBL | A0A445FN73 | 0.0 | A0A445FN73_GLYSO; Transcription factor bHLH51 | ||||
STRING | GLYMA18G02940.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5796 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 5e-47 | bHLH family protein |
Publications ? help Back to Top | |||
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