PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN31261.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 843aa MW: 93884.5 Da PI: 6.7571 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.6 | 4.9e-23 | 142 | 243 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++ +++a+e+ + k++ +++l+ +d++ ++W++k+i+r++++r++l++GW+ Fv++++L +gD ++F + +++el+ KHN31261.1 142 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-KQPPTQELVAKDLHANEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELR 237 99*****************************63.4445569************************************************..449999** PP EEEE-S CS B3 94 vkvfrk 99 v+v+r+ KHN31261.1 238 VGVRRA 243 ***996 PP | |||||||
2 | Auxin_resp | 121.7 | 5.3e-40 | 268 | 350 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s++eF+v++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp rW++SkWr+Lk KHN31261.1 268 AWHAISTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPKRWRDSKWRCLK 350 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.89E-40 | 138 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-40 | 139 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.44E-20 | 140 | 242 | No hit | No description |
SMART | SM01019 | 2.9E-22 | 142 | 244 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.9E-21 | 142 | 243 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.406 | 142 | 244 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.3E-37 | 268 | 350 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 23.127 | 713 | 795 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 5.4E-10 | 716 | 790 | No hit | No description |
Pfam | PF02309 | 2.5E-7 | 754 | 801 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 843 aa Download sequence Send to blast |
MTSLEVTMKG NCLNHNDGGA TEPHSPSTAK DAEAALFREL WHACAGPLVT VPRERERVFY 60 FPQGHIEQVE ASTNQVADQH MPVYDLPPKI LCRVINVQLK AEPDTDEVFA QVTLLPEPNQ 120 DENAVEKEPP PPPPPRFHVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSKQPPTQ 180 ELVAKDLHAN EWRFKHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGELRVGV 240 RRAMRQQGNV PSSVISSHSM HLGVLATAWH AISTGTIFTV YYKPRTSPAE FIVPYDQYME 300 SLKNNYSIGM RFKMRFEGEE APEQRFTGTI VGIEDSDPKR WRDSKWRCLK VRWDETSNTP 360 RPERVSPWKI EPALAPPALN PLSMPRPKRP RSNAVPSSPD SSVLTREASS KVSIDPSPAN 420 GFPRVLQGQE FSTLRGNFAE SNESDTAEKS VVWPPAAVDD EKMDVSTSRR YGSESWMSMG 480 RNEPTYSDLL SGFGASGDPS HLSLKDQMSP AYSARKQSLD HEGKLHMPHP WPVMPSSLSL 540 SILDSNTKGP AHGGDTTYKA RGNLRYSAFG EYPALHGHKV EHSHGNLMPP PPALLTQYQS 600 PCSRELMSKQ VSAKTCEAVK PKDGDCKLFG FSLISGPTLP EPSLSQRNVS EAADQMHLTA 660 HQQRTSENDE KLDHSKGSRP VDDIVVDDQD RPLRTSQLHT KDVQAKPLSG SARSCTKVHK 720 KGIALGRSVD LTKYSGYDEL VAELDQLFEF GGELLSTKKD WLIVFTDNEG DMMLVGDDPW 780 QEFCAMVRKI YIYPKEEIQK MSPGTLSSKN EENHSVTASE GADTKDVKCQ PHQKFNSENG 840 LDA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-178 | 35 | 372 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 1e-178 | 35 | 372 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 1e-178 | 35 | 372 | 18 | 354 | Auxin response factor 1 |
4ldx_A | 1e-178 | 35 | 372 | 18 | 354 | Auxin response factor 1 |
4ldx_B | 1e-178 | 35 | 372 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN31261.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003523174.1 | 0.0 | auxin response factor 2B | ||||
Refseq | XP_028229492.1 | 0.0 | auxin response factor 2B-like | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A445L2R5 | 0.0 | A0A445L2R5_GLYSO; Auxin response factor | ||||
TrEMBL | I1JXQ2 | 0.0 | I1JXQ2_SOYBN; Auxin response factor | ||||
STRING | GLYMA04G37760.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3281 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |