PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31250.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 246aa    MW: 27305.5 Da    PI: 9.8826
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31250.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78e-2070119255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a+++a+++++g
  KHN31250.1  70 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAALAYDEAALRFKG 119
                 7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.9E-3369128IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2270128IPR016177DNA-binding domain
CDDcd000181.50E-2070128No hitNo description
SMARTSM003801.1E-3770133IPR001471AP2/ERF domain
PfamPF008478.7E-1470119IPR001471AP2/ERF domain
PROSITE profilePS5103224.94870127IPR001471AP2/ERF domain
PRINTSPR003671.6E-117182IPR001471AP2/ERF domain
PRINTSPR003671.6E-1193109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSFLSITFNL LVGGGCAQSC LNASPTISLR DQFYDYLIDL GSQLSSLELL LVTLNRFLGK  60
VIKKSVRRRH YRGVRQRPWG KWAAEIRDPK KAARVWLGTF ETAEAAALAY DEAALRFKGS  120
KAKLNFPERV QGTASEFGYL TNQHMSSSST NSNPIAPHLT TQETYSPSHF QYAQQQFMSG  180
GSNSFSNQDM LRFYGGDNMF VSSQQSASSS SSTALSQQQQ EELLKFSMQF GGSSHSNHSG  240
NWRGGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2869130163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150352e-90AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522452.11e-135ethylene-responsive transcription factor ERF113
TrEMBLA0A445L2U11e-131A0A445L2U1_GLYSO; Ethylene-responsive transcription factor ERF114
STRINGGLYMA04G37866.11e-130(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-23ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]