PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30917.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 420aa    MW: 48757.3 Da    PI: 7.5363
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30917.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-16197239145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ WT eEd+ l++++ + G++ W+ Ia +++ gRt++++k++w+
       KHN30917.1 197 KDTWTDEEDKVLIEVHDEVGNK-WAEIATRLP-GRTENSIKNHWN 239
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.972147191IPR017877Myb-like domain
SuperFamilySSF466893.83E-26171250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-12171203IPR009057Homeodomain-like
PROSITE profilePS5129426.703192246IPR017930Myb domain
SMARTSM007171.4E-15196244IPR001005SANT/Myb domain
PfamPF002492.9E-15197239IPR001005SANT/Myb domain
CDDcd001671.39E-11199242No hitNo description
Gene3DG3DSA:1.10.10.601.0E-18204240IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MDLETMFKET YVSQPTHLQE SCLQPSLKDV LLSSYGFFKD FHHIDQFHHV NISSSNTIQT  60
PNFDAFDNFT NTGSSPDFSK SQRNQLDMMV ANQRFLPFNP QEIKPSNFVV PYEVSCTSPV  120
YYYKRVGVNK NNKSYPTTRR TFKVRKKSNI VKGKWTIDDG FTISNSIQPH IAKILPGRIG  180
KQRRERWHNH LRPDIKKDTW TDEEDKVLIE VHDEVGNKWA EIATRLPGRT ENSIKNHWNA  240
TKRRQHSKRK CRSKYLRGTL LQEYIKSLNL DKNPPRDYRR KCSSNYGSAI MSDDNKISTS  300
KITAPALPQT AFQFCAATDF LAPNYDFRVV PDFFFGENLF EEGCNVDSLL DGVPCAPLMD  360
KKDFEEKLQC DDLTMCVPFV NIDENHIETE MPLEMLEVEL KKELCLVEMM SQINNEILHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-331502452104MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-331502452104C-Myb DNA-Binding Domain
1msf_C7e-331502452104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30917.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6868710.0FJ686871.1 Glycine max clone gmw1-61M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006582524.10.0transcription factor MYB98
SwissprotQ9S7L22e-70MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A445L1Z70.0A0A445L1Z7_GLYSO; Transcription factor MYB98
STRINGGLYMA06G19280.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.16e-73myb domain protein 98
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]