PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30413.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 425aa    MW: 47973 Da    PI: 6.5887
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30413.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.8e-1696186199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f+k ++ps+v    +l lpkkf++ ++  ++ ++t+ lede+g+ +e k+  +k +    l++GW++F  a++L e D+++F+l++ s+f  +v ++r+
  KHN30413.1  96 FLKSMLPSHVAGGFWLGLPKKFCNLYM--PKLDTTIALEDETGQLYETKYLAQKAG----LSAGWRGFSIAHNLLEMDVLIFHLVQPSKF--RVYIIRS 186
                 89*********************8886..44889****************444444....************************998999..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-1889187IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-2289186IPR015300DNA-binding pseudobarrel domain
CDDcd100177.75E-2394185No hitNo description
PROSITE profilePS5086312.06996187IPR003340B3 DNA binding domain
SMARTSM010191.8E-1896187IPR003340B3 DNA binding domain
PfamPF023621.3E-1396186IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MAEKERWPVC SFMGDGEAVA VPHSKLKKKG RPPIPKKENV FKELNGVDDD PRNPQKRRKG  60
EGTGMGIVID APPCNTQAYQ RAKEVQANLS PQFPTFLKSM LPSHVAGGFW LGLPKKFCNL  120
YMPKLDTTIA LEDETGQLYE TKYLAQKAGL SAGWRGFSIA HNLLEMDVLI FHLVQPSKFR  180
VYIIRSQESD ELDGALVLLK SDGCRKQSDD ANDHKNSGMI FCANVSHPDQ VENTSEDFDS  240
GIRFSESVVS FKQVTGVENF RIVVNGLVID SELSKYIRNK YYELCCSQRS FLHDHLLEGL  300
NTKLAAGIIS ETINIADAIK ASNLTTSPDS LVIWDKTLKA FETMGMNVSF LLIRLDQLMK  360
LALKLKRYKE VTLERDHAAE ELKALEAKLL EVKQTINRLD QENDIQHMHP ERLETMFQEL  420
ADAPW
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30413.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028224334.10.0B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A0B2REX20.0A0A0B2REX2_GLYSO; B3 domain-containing protein
STRINGGLYMA01G45623.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-37B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]