PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN30386.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 27533.2 Da PI: 7.6605 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.4 | 2.7e-13 | 62 | 114 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++N+ + Lr+llP + + kK+s +++ ++ +YI +Lq KHN30386.1 62 KKLSHNASERDRRKKVNDLVSSLRSLLPGP--DQTKKMSIPATVSRVLKYIPELQ 114 6789*************************6..48888***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.392 | 61 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.64E-12 | 62 | 118 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-12 | 62 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-15 | 62 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-10 | 62 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.2E-10 | 67 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MVALFSPPVF STKGWFLEEE PLSYDVSSDY SFPYQFFAPQ TQIELEIERS SAPSPEDPAM 60 VKKLSHNASE RDRRKKVNDL VSSLRSLLPG PDQTKKMSIP ATVSRVLKYI PELQHQVQAL 120 TKKKEELLCR ISKNLKGDSV NKESQRRISH HNSDFAVSTS RLNDCEAVVH ISSYEAHKAP 180 LSDILQCLEN NGLYLLNASS SETFGGRVFY NLHFQVEKTH RLESEILTEK LLSIYEKQRI 240 F |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN30386.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031101 | 0.0 | KT031101.1 Glycine max clone HN_CCL_45 bHLH transcription factor (Glyma03g28630.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001354033.1 | 1e-179 | bHLH transcription factor bHLH300 | ||||
Refseq | XP_028225228.1 | 1e-179 | transcription factor ORG3-like | ||||
TrEMBL | A0A0B2R7G6 | 1e-177 | A0A0B2R7G6_GLYSO; Transcription factor ORG2 | ||||
TrEMBL | I1JN79 | 1e-177 | I1JN79_SOYBN; BHLH transcription factor | ||||
STRING | GLYMA03G28630.1 | 1e-178 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 2e-54 | bHLH family protein |
Publications ? help Back to Top | |||
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