PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN30385.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 27588.3 Da PI: 7.1965 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.2 | 1.5e-13 | 62 | 114 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++N+ + Lr+llP a + kK+s +++ ++++YI +Lq KHN30385.1 62 KKLSHNASERDRRKKVNHLVSSLRSLLPVA--DQTKKMSIPTTVSRVIKYIPELQ 114 6789*************************6..48888***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.24 | 61 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.51E-11 | 62 | 118 | No hit | No description |
Pfam | PF00010 | 7.2E-11 | 62 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-15 | 62 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-12 | 62 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-10 | 67 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.40.50.150 | 2.0E-4 | 106 | 220 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MVALFSPPVF STKGWLLEED PLSYDVSSEY SFPYQFYSPQ TQIELEIERS TSPSPEDPAM 60 VKKLSHNASE RDRRKKVNHL VSSLRSLLPV ADQTKKMSIP TTVSRVIKYI PELQQQVEAL 120 SKKKEDLLCR ISRQLQGDAV NKDSQRRISH HNSDFVVSTS RLNDCEAVVH ISSYEAHKAP 180 LSEILQCLEN NGLLLLNASS SETFGGRVFY NLHFQVEKTQ RLESEILTEK LLSIYEKQRI 240 F |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN30385.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031101 | 0.0 | KT031101.1 Glycine max clone HN_CCL_45 bHLH transcription factor (Glyma03g28630.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520500.1 | 1e-178 | transcription factor ORG2 | ||||
Refseq | XP_028225227.1 | 1e-178 | transcription factor ORG2-like | ||||
TrEMBL | A0A0B2RA03 | 1e-176 | A0A0B2RA03_GLYSO; Transcription factor ORG2 | ||||
TrEMBL | K7KEQ9 | 1e-176 | K7KEQ9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G28611.1 | 1e-177 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 9e-49 | bHLH family protein |
Publications ? help Back to Top | |||
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