PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN30338.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 97aa MW: 10965.2 Da PI: 9.4356 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.6 | 5.8e-08 | 10 | 55 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 g+W+ + + + +a + + ++ +W +a+ +g g+t++++k ++ KHN30338.1 10 GSWSVKDNKAFEKALAVYDKDtpdRWYNVAHAVG-GKTPEEVKRHYE 55 79********************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.659 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 8.7E-8 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.28E-12 | 10 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.1E-6 | 10 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-6 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.21E-4 | 18 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MASSSISASG SWSVKDNKAF EKALAVYDKD TPDRWYNVAH AVGGKTPEEV KRHYELLVQD 60 VKHIESGRVP FPNYKKTTSG STDQEEKRLR NLNLNLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-41 | 1 | 94 | 1 | 92 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN30338.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-85 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003521116.1 | 1e-67 | transcription factor RADIALIS | ||||
Refseq | XP_028225172.1 | 1e-67 | transcription factor RADIALIS-like | ||||
Swissprot | Q58FS3 | 1e-40 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A0B2REQ2 | 3e-66 | A0A0B2REQ2_GLYSO; DnaJ like subfamily C member 2 | ||||
TrEMBL | I1JN30 | 3e-66 | I1JN30_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G28050.1 | 5e-67 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 3e-34 | RAD-like 1 |
Publications ? help Back to Top | |||
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