PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30282.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 362aa    MW: 41828.3 Da    PI: 6.9114
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30282.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.13.9e-1248104155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  KHN30282.1  48 SIYRGVTRHRWTGRYEAHLWDkHCWNEsQNKKGRQGAYDNEEAAAHAYDLAALKYWG 104
                 57***********************9998888888********************98 PP
2AP251.72.2e-16147198155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  KHN30282.1 147 SKYRGVARHHHNGRWEARIGKvF---G-NKYLYLGTYATQEEAATAYDLAAIEYRG 198
                 89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.07E-1548114IPR016177DNA-binding domain
PfamPF008471.2E-848104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-1349113IPR001471AP2/ERF domain
PROSITE profilePS5103218.74249112IPR001471AP2/ERF domain
SMARTSM003803.8E-1949118IPR001471AP2/ERF domain
PRINTSPR003675.4E-65061IPR001471AP2/ERF domain
PfamPF008471.4E-12147198IPR001471AP2/ERF domain
CDDcd000182.51E-24147208No hitNo description
SuperFamilySSF541718.5E-18147208IPR016177DNA-binding domain
PROSITE profilePS5103218.386148206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-18148207IPR001471AP2/ERF domain
SMARTSM003804.8E-25148212IPR001471AP2/ERF domain
PRINTSPR003675.4E-6188208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAKKSQLRTQ KNNATNDDIN LNATNTVITK VKRTRRSVPR DSPPRRSSIY RGVTRHRWTG  60
RYEAHLWDKH CWNESQNKKG RQGAYDNEEA AAHAYDLAAL KYWGQDTILN FPLSNYLNEL  120
KEMEGQSREE YIGSLRRKSS GFSRGISKYR GVARHHHNGR WEARIGKVFG NKYLYLGTYA  180
TQEEAATAYD LAAIEYRGLN AVTNFDLSRY IKWLKPNNTN SNNDQISINL TNINNNCTNN  240
FIPNPDQEQE VSFFHNQDSL NNTIVEEATL VPHQPRPASA TLALELLLQS SKFKEMVEMT  300
SVANLSTQME SDQLPQCTFP DHIQTYFEYE DSNKYEEGDD LLFKFSEFSS IVPFYHCDEF  360
ES
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30282.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575322.10.0AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_028212181.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
SwissprotQ94AN41e-101AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0B2REK70.0A0A0B2REK7_GLYSO; AP2-like ethylene-responsive transcription factor
STRINGGLYMA02G36880.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.16e-82ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]