PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30254.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 384aa    MW: 42062.7 Da    PI: 8.5882
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30254.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.3e-13312357655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  KHN30254.1 312 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 357
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148306356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-16309372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.64E-12310359No hitNo description
Gene3DG3DSA:4.10.280.105.2E-15311370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-10312357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11312362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDSHIHHHHH QGYQQHQNQP SSGLLRFRSA PSSLLSNLTP FVSEDFGSSS FRELQGNNNK  60
GCSKDLSSMN SHKGVYGGGL PPHYPRHRGS SSSAATSSSA MEGSFGLVGS MGMNHETPQN  120
GLGSSLLRHS TSPAGLFSNN NINFQNGFAT MKGVGNYGGV NGSNGELSPC INGLKNQVSF  180
SPRNASSLGM LSQISEIGNE DIEATSPDDD TRHEGNDTQQ YGPGFPYGSW NDTPQLSENL  240
SGLKRGRSSN EKMFSDEIQN GELGNQVNML SHHLSLQKTS AEMITMKKLL QFPDSVPCKI  300
RAKRGCATHP RSIAERVRRT RISERMRKLQ ELVPNMDKQT NTADMLDLAV EYIKDLQKQF  360
KTLSEKRAKC ECTSMQKADT NQIA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30254.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-102AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028183154.10.0transcription factor bHLH130-like
SwissprotQ66GR35e-87BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A0B2RD050.0A0A0B2RD05_GLYSO; Transcription factor bHLH130
STRINGGLYMA10G12150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-85bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]