PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN30196.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 160aa MW: 17962.8 Da PI: 9.1849 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00043 | 29 | 51 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+++Fs+ L H +H KHN30196.1 29 FKCKTCNRRFSSFQALGGHRASH 51 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 10.8 | 0.0016 | 79 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F L H+r+H KHN30196.1 79 HPCPICGLEFAIGQALGGHMRKH 101 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.99E-7 | 29 | 101 | No hit | No description |
PROSITE profile | PS50157 | 10.367 | 29 | 56 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.086 | 29 | 51 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 6.2E-12 | 29 | 53 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 31 | 51 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.29 | 79 | 101 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.1E-8 | 79 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MANCLMLLTK VGESETNYPI SKGRDDGDFK CKTCNRRFSS FQALGGHRAS HKKPKLMVTD 60 LSWHHELPNN PTMKQPRMHP CPICGLEFAI GQALGGHMRK HRSAINDGLL CGKPSSLSIL 120 KNSSKDAHER LNLRLDLNLT PMEEDDLKLN LRTPVLNCFI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN30196.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ417330 | 0.0 | FJ417330.1 Glycine soja putative Cys2-His2 type zinc finger protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003543503.1 | 1e-116 | zinc finger protein ZAT12 | ||||
Refseq | XP_028188792.1 | 1e-116 | zinc finger protein ZAT12-like | ||||
TrEMBL | A0A445IDV8 | 1e-115 | A0A445IDV8_GLYSO; Zinc finger protein ZAT11 | ||||
TrEMBL | B7TYQ1 | 1e-114 | B7TYQ1_GLYSO; Putative Cys2-His2 type zinc finger protein | ||||
TrEMBL | K7M3C6 | 1e-115 | K7M3C6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G40860.2 | 1e-115 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 5e-36 | C2H2 family protein |
Publications ? help Back to Top | |||
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