PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN30161.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GRAS

Protein Properties

Length: 622aa MW: 70952.2 Da PI: 6.3847

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN30161.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	361.1	1.5e-110	248	619	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL+ cA+a++s++ + a++l++++ +++sp+ + +qRla+yf +AL+arl +++ ++++al++++ts ++ ++a++++ v+P+ k++ + aN KHN30161.1 248 LRTLLMLCAQAIASDNPSSAKQLVKQIMQHSSPTCNETQRLAHYFGNALEARLDGTGYKVCSALSSKRTS---AKDMIKAYHVYASVCPFEKLAIIFAN 343 5789*************************************************999999999999998...99******************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 + I + ++++HiiDf+i +G++WpaL+ L+ R++gpp+lRiTg++ p++g +e++ etg+rLa+f+++++vpfefn+ +a+r++++++e+L++ KHN30161.1 344 NSIWNPSVDAKAIHIIDFGIRYGFKWPALISRLSRRSGGPPKLRITGIDVPQPGlrPQERVLETGRRLANFCKRFNVPFEFNA-IAQRWDTIRVEDLKI 441 ****************************************************9**********************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +p+E +aVn+ +q ++llde+v l++ rd+vL+l+k+ +P+++v+ + +++ + F+ rf eal +y+alfd+l+++++r++ r + E+el+greiv KHN30161.1 442 EPNEFVAVNCLFQFEHLLDETVVLNNSRDAVLRLIKNANPDIFVHGIVNGSYDVPFFVSRFREALFHYTALFDMLDTNVARQDPMRLMFEKELFGREIV 540 *********************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 n++aceg+er+er +t+++W+ r ++ GF+ +pl++++ + k lr + ++ + +e + +++++gWk+r L++ S+W KHN30161.1 541 NIIACEGFERVERPQTYKQWQLRNMRNGFRLLPLDHRIIGKLKDRLRDDAhNNNFLLEVDGDWVLQGWKGRILYASSCW 619 ******************************************99887999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.064	222	599	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.4E-108	248	619	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence Send to blast
MLMEDDTEER YSMFHDSLAL QHTERSFLEA INHNYPSPSY SSSTHYHLDN YPSVESPEPC 60 LSACSADNIT FSASSSCASN NTTSSSEFPL RSLYPLLPDT TDEFVFHSNS TQSTINTPFG 120 FFDNPLAEIF ERRVDLGTLF LPANTPFSSS FTKVPHVVIK TEAEEGDHFL TGRKQREREE 180 YEAADGRSRK QSAAHMDESE LSELFDKVVL GTDLRKRVPP NTTHKTTILT NMLYGGDVWE 240 NDDQVVDLRT LLMLCAQAIA SDNPSSAKQL VKQIMQHSSP TCNETQRLAH YFGNALEARL 300 DGTGYKVCSA LSSKRTSAKD MIKAYHVYAS VCPFEKLAII FANNSIWNPS VDAKAIHIID 360 FGIRYGFKWP ALISRLSRRS GGPPKLRITG IDVPQPGLRP QERVLETGRR LANFCKRFNV 420 PFEFNAIAQR WDTIRVEDLK IEPNEFVAVN CLFQFEHLLD ETVVLNNSRD AVLRLIKNAN 480 PDIFVHGIVN GSYDVPFFVS RFREALFHYT ALFDMLDTNV ARQDPMRLMF EKELFGREIV 540 NIIACEGFER VERPQTYKQW QLRNMRNGFR LLPLDHRIIG KLKDRLRDDA HNNNFLLEVD 600 GDWVLQGWKG RILYASSCWV PA

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence Send to blast

MLMEDDTEER YSMFHDSLAL QHTERSFLEA INHNYPSPSY SSSTHYHLDN YPSVESPEPC  60
LSACSADNIT FSASSSCASN NTTSSSEFPL RSLYPLLPDT TDEFVFHSNS TQSTINTPFG  120
FFDNPLAEIF ERRVDLGTLF LPANTPFSSS FTKVPHVVIK TEAEEGDHFL TGRKQREREE  180
YEAADGRSRK QSAAHMDESE LSELFDKVVL GTDLRKRVPP NTTHKTTILT NMLYGGDVWE  240
NDDQVVDLRT LLMLCAQAIA SDNPSSAKQL VKQIMQHSSP TCNETQRLAH YFGNALEARL  300
DGTGYKVCSA LSSKRTSAKD MIKAYHVYAS VCPFEKLAII FANNSIWNPS VDAKAIHIID  360
FGIRYGFKWP ALISRLSRRS GGPPKLRITG IDVPQPGLRP QERVLETGRR LANFCKRFNV  420
PFEFNAIAQR WDTIRVEDLK IEPNEFVAVN CLFQFEHLLD ETVVLNNSRD AVLRLIKNAN  480
PDIFVHGIVN GSYDVPFFVS RFREALFHYT ALFDMLDTNV ARQDPMRLMF EKELFGREIV  540
NIIACEGFER VERPQTYKQW QLRNMRNGFR LLPLDHRIIG KLKDRLRDDA HNNNFLLEVD  600
GDWVLQGWKG RILYASSCWV PA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-48	252	619	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN30161.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028188762.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A445IDT4	0.0	A0A445IDT4_GLYSO; Scarecrow-like protein 14 isoform A
STRING	GLYMA13G41220.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]