PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN30160.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GRAS

Protein Properties

Length: 554aa MW: 63002.2 Da PI: 6.7995

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN30160.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	248.7	2.3e-76	276	551	1	277
GRAS 1 lvelLlecAeavss.gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+av+s ++ + a++l++++++++sp gd +qRla+yf +AL+arl +++ ++y+ l++++t +++ ++a++++ v+P+ k++ + a KHN30160.1 276 LRTLLMLCAQAVASaSSPSFAKQLVKQIKQNSSPIGDETQRLAHYFGNALEARLDGTGYQVYSVLSSKRTF---VKDMIKAYHVYASVCPFEKIAVMFA 371 5789******9946678***************************************999999888...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 N+ I + +e++e++Hii f+i +G++ p L+ L+ R++gpp+lRiTg++ p++g ++++ etg+rLa+++++++vpfefn+ +a+r++++++++L+ KHN30160.1 372 NNYIRNLTEEAETIHIIEFGIRYGFKGPGLIGHLSRRAGGPPKLRITGIDLPQPGlrPRQRVLETGRRLANYCKRFNVPFEFNA-MAQRWDTIKVDDLK 469 ****************************************************99**********************.8********* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++++E +aVn+++q ++llde+v l+++rd+vL+l+k+ +P+++v+ + +++ + F+ f eal +y+alfd+l+++++r KHN30160.1 470 IQRNEFVAVNCMFQFEHLLDETVVLNNPRDAVLRLIKNANPDIFVHGIVNGSYDVPFFVSWFREALFHYTALFDMLDTNVAR 551 *****************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.537	250	554	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.0E-74	276	551	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MHTYPKNEFL LFLLVRWIRV SSINISKEDE SDVSAVLGYI KQMLMEDNTE ENYSMFHDSL 60 ALQDTQRSFY EVITHNHNYP SSSTHHHVHN YLSVESPDQS LSCTSSSAES QWRNLDHIPD 120 NFVFHSNSTT NMNTGFGFFN DSLQAGFLDS TFLQKFQRGV DQGTQFLPKH TPFIIAPSFT 180 KAPHLVIKTE AEEGDHFRTV SGGRKIRERE ENEADERSRK QSAPYMDDSE LSELFDKVLI 240 GTGLGKGVPP NTTHETILTN MFGGDVRKSD GEVVDLRTLL MLCAQAVASA SSPSFAKQLV 300 KQIKQNSSPI GDETQRLAHY FGNALEARLD GTGYQVYSVL SSKRTFVKDM IKAYHVYASV 360 CPFEKIAVMF ANNYIRNLTE EAETIHIIEF GIRYGFKGPG LIGHLSRRAG GPPKLRITGI 420 DLPQPGLRPR QRVLETGRRL ANYCKRFNVP FEFNAMAQRW DTIKVDDLKI QRNEFVAVNC 480 MFQFEHLLDE TVVLNNPRDA VLRLIKNANP DIFVHGIVNG SYDVPFFVSW FREALFHYTA 540 LFDMLDTNVA RKIP

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MHTYPKNEFL LFLLVRWIRV SSINISKEDE SDVSAVLGYI KQMLMEDNTE ENYSMFHDSL  60
ALQDTQRSFY EVITHNHNYP SSSTHHHVHN YLSVESPDQS LSCTSSSAES QWRNLDHIPD  120
NFVFHSNSTT NMNTGFGFFN DSLQAGFLDS TFLQKFQRGV DQGTQFLPKH TPFIIAPSFT  180
KAPHLVIKTE AEEGDHFRTV SGGRKIRERE ENEADERSRK QSAPYMDDSE LSELFDKVLI  240
GTGLGKGVPP NTTHETILTN MFGGDVRKSD GEVVDLRTLL MLCAQAVASA SSPSFAKQLV  300
KQIKQNSSPI GDETQRLAHY FGNALEARLD GTGYQVYSVL SSKRTFVKDM IKAYHVYASV  360
CPFEKIAVMF ANNYIRNLTE EAETIHIIEF GIRYGFKGPG LIGHLSRRAG GPPKLRITGI  420
DLPQPGLRPR QRVLETGRRL ANYCKRFNVP FEFNAMAQRW DTIKVDDLKI QRNEFVAVNC  480
MFQFEHLLDE TVVLNNPRDA VLRLIKNANP DIFVHGIVNG SYDVPFFVSW FREALFHYTA  540
LFDMLDTNVA RKIP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-33	267	548	9	279	Protein SCARECROW
5b3h_D	5e-33	267	548	9	279	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN30160.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025981676.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	1e-151	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A0R0H4U7	0.0	A0A0R0H4U7_SOYBN; Uncharacterized protein
STRING	GLYMA13G41231.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-154	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]