PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30158.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 626aa    MW: 70802 Da    PI: 5.5505
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30158.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS148.94.9e-463034623166
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +lL++cA+av++ d+++a++lL+++++++sp+g+ +qRla+yf ++L+ rla    ++ + +p + ++    ++ l+a+klf+  sP+ ++++ ++ + 
  KHN30158.1 303 TLLTQCAQAVANYDQRNANELLSQIRQHSSPYGNGLQRLAHYFSNGLQIRLAA---GTPSYMPLEVAT---AADMLKAYKLFVTSSPLQRLTNYLTTKS 395
                 69**************************************************9...333344444444...789************************* PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                 I   v++e+ vHiiDf+i +G+QWp+L+++L++R ++ p+lRiTg++ p++g   ke++eetg+rL+
  KHN30158.1 396 IISLVKNESSVHIIDFGICYGFQWPCLIKKLSDRLGDRPRLRITGIDLPQPGfrPKERVEETGRRLN 462
                 ***************************************************9*************95 PP
2GRAS140.41.8e-43463624213374
        GRAS 213 lldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311
                 l+de+v+++ +rd+vL+l+++++P+++++   +  ++++ Fl+rf eal+++s+lfd +ea++pre+ +r+++E++l+gr++ nv+acegaer+er et
  KHN30158.1 463 LPDETVDVKCPRDAVLRLIRRINPNMFIHGVVNGTYSAPFFLTRFREALHHFSSLFDVYEANVPREDTQRVMLEKRLFGRDAINVIACEGAERVERPET 561
                 7899999******************************************************************************************** PP

        GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +++W+ r ++aGF++vpl+ + + +a  ++++ + + + v e++++++lg k+r L ++SaW+
  KHN30158.1 562 YKQWQVRNQRAGFEQVPLDPQLVVDATDIVKREYHEDFVVAENDKWVFLGRKGRILNAISAWT 624
                 **********************************899*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.182275604IPR005202Transcription factor GRAS
PfamPF035141.7E-43303462IPR005202Transcription factor GRAS
PfamPF035146.3E-41463624IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MMVVTIDNND GGSDNRVMTA TVVIMVVTTV TLMIMVVEVM IVDDNDVQHF GGTISVFSNQ  60
NQVAKGFEFV DSSSPSSGTS SSGESMEFTK YSNPILRYIS DILMDEEDDL ERRPCMLQDC  120
LRLQAAEKSF HDVLLHQKPS PFRDESVGII HSDEIFGRTP KTPLVDSPDA VPDPPFGESR  180
PIGYFLDGTW NLFQSHTKMV EKGSSASALR EKRNHQMDDY ESHEQEARKG SKVSAVFYDE  240
SEPPEILDEV LLYQTGRSQP LYSSPTEPSQ TQRVDLGRSS GKEARARSKE VSSNTETAID  300
LWTLLTQCAQ AVANYDQRNA NELLSQIRQH SSPYGNGLQR LAHYFSNGLQ IRLAAGTPSY  360
MPLEVATAAD MLKAYKLFVT SSPLQRLTNY LTTKSIISLV KNESSVHIID FGICYGFQWP  420
CLIKKLSDRL GDRPRLRITG IDLPQPGFRP KERVEETGRR LNLPDETVDV KCPRDAVLRL  480
IRRINPNMFI HGVVNGTYSA PFFLTRFREA LHHFSSLFDV YEANVPREDT QRVMLEKRLF  540
GRDAINVIAC EGAERVERPE TYKQWQVRNQ RAGFEQVPLD PQLVVDATDI VKREYHEDFV  600
VAENDKWVFL GRKGRILNAI SAWTPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3830762525380Protein SCARECROW
5b3h_A1e-3830762524379Protein SCARECROW
5b3h_D1e-3830762524379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30158.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025981534.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC100779806
SwissprotQ9XE581e-122SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A445IDV30.0A0A445IDV3_GLYSO; Scarecrow-like protein 11
STRINGGLYMA13G41251.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.11e-125GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]