PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30121.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 743aa    MW: 85196.2 Da    PI: 6.7906
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30121.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.34.8e-2729114291
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 fY+eYAk++GF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+++vk+++dgkw+v+++++eHnHel p
  KHN30121.1  29 FYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLP 114
                 9***************************************999877....9************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-2429114IPR004330FAR1 DNA binding domain
PfamPF105514.3E-28227319IPR018289MULE transposase domain
PROSITE profilePS5096610.373506542IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-7512540IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-7517544IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MDSSAVVGST ISEPHSDMEF ESHEAAYAFY KEYAKSAGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFVKEHNH ELLPAQAHFF  120
RSHRSSDPLS NDVRMRRRKN SNAVSKLFTA YQNVDCLENF VKHQHDKGRS LVLEAGHAHL  180
LLELFMHMQE ENPKFFYAVD LNEEHRLRNV FWVDAKGLED FTYFSDVVSF DTTYFTSKYK  240
IPLVMFIGVN HHIQPTLLGC ALIADETIYT FAWLLQTWLI AMGERAPQVL LTDQNEAIKA  300
AVAAFLPGTR HCFCLWHILE MIPKQLEFFG AWHDSFLEKF NNCIYKSWTE EQFDKKWWEL  360
VDDFNLRDVD WVQSLYDDRT CWAPTFMKDI SFAGLSTSSR SESLNSLFDN YIQIDTSLRA  420
FIEQYRVILE DRHEEEAKAN FDAWHETPDL KSPSPFEKQM LSVYTHEIFR KFQVEVLGAA  480
ACHLKKENDG VTSAYTVKDF ENNQNYMVEW NTSTSDICCS CHLFEYKGYL CRHAIVVLQM  540
SGVFSIPPKY ILQRWTNAAM SRHPIGEKLE EVQSKVRRFN DLCRRAIILG EEGSLSQESY  600
YMALGAISEA LKQCANLNNS VENGMRPDAS STHVVCNVEE EYHSIITSKN KVPDPKPNTG  660
KKAVRSGMAG RSLGSVENSE GNKGKVSQVE VGSGKDGFQQ MELTDPRSHN VMPMQFHSVV  720
PALFHNVSSP FHTAPSTHLH ENR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30121.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028190799.10.0protein FAR1-RELATED SEQUENCE 4-like isoform X1
RefseqXP_028190800.10.0protein FAR1-RELATED SEQUENCE 4-like isoform X1
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A445IE260.0A0A445IE26_GLYSO; Protein FAR1-RELATED SEQUENCE 4 isoform A
STRINGGLYMA13G41660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]