PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN30121.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 743aa MW: 85196.2 Da PI: 6.7906 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.3 | 4.8e-27 | 29 | 114 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk++GF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk+++dgkw+v+++++eHnHel p KHN30121.1 29 FYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLP 114 9***************************************999877....9************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-24 | 29 | 114 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.3E-28 | 227 | 319 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.373 | 506 | 542 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.3E-7 | 512 | 540 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-7 | 517 | 544 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 743 aa Download sequence Send to blast |
MDSSAVVGST ISEPHSDMEF ESHEAAYAFY KEYAKSAGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFVKEHNH ELLPAQAHFF 120 RSHRSSDPLS NDVRMRRRKN SNAVSKLFTA YQNVDCLENF VKHQHDKGRS LVLEAGHAHL 180 LLELFMHMQE ENPKFFYAVD LNEEHRLRNV FWVDAKGLED FTYFSDVVSF DTTYFTSKYK 240 IPLVMFIGVN HHIQPTLLGC ALIADETIYT FAWLLQTWLI AMGERAPQVL LTDQNEAIKA 300 AVAAFLPGTR HCFCLWHILE MIPKQLEFFG AWHDSFLEKF NNCIYKSWTE EQFDKKWWEL 360 VDDFNLRDVD WVQSLYDDRT CWAPTFMKDI SFAGLSTSSR SESLNSLFDN YIQIDTSLRA 420 FIEQYRVILE DRHEEEAKAN FDAWHETPDL KSPSPFEKQM LSVYTHEIFR KFQVEVLGAA 480 ACHLKKENDG VTSAYTVKDF ENNQNYMVEW NTSTSDICCS CHLFEYKGYL CRHAIVVLQM 540 SGVFSIPPKY ILQRWTNAAM SRHPIGEKLE EVQSKVRRFN DLCRRAIILG EEGSLSQESY 600 YMALGAISEA LKQCANLNNS VENGMRPDAS STHVVCNVEE EYHSIITSKN KVPDPKPNTG 660 KKAVRSGMAG RSLGSVENSE GNKGKVSQVE VGSGKDGFQQ MELTDPRSHN VMPMQFHSVV 720 PALFHNVSSP FHTAPSTHLH ENR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN30121.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028190799.1 | 0.0 | protein FAR1-RELATED SEQUENCE 4-like isoform X1 | ||||
Refseq | XP_028190800.1 | 0.0 | protein FAR1-RELATED SEQUENCE 4-like isoform X1 | ||||
Swissprot | Q6NQJ7 | 0.0 | FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | A0A445IE26 | 0.0 | A0A445IE26_GLYSO; Protein FAR1-RELATED SEQUENCE 4 isoform A | ||||
STRING | GLYMA13G41660.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.1 | 0.0 | FAR1-related sequence 4 |
Publications ? help Back to Top | |||
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