PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30120.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 408aa    MW: 45081.4 Da    PI: 6.3244
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30120.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12342387655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR +i +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  KHN30120.1 342 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 387
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.288336386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-17339400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.04E-13340391No hitNo description
Gene3DG3DSA:4.10.280.102.8E-16341400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-14342392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9342387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MESDLEQQPQ VNSSGLTRYR SAPSSYFSNI IDREFYEHVF NRPSSPETER VFSRFMNSLN  60
SEEEDSLHQH KLSTDSSSSS AAVKEEVVNQ HDQSVNEEHV VVAALQQSNN NMNSYNNSAS  120
RNFYQSSSSK PPLPNPNPNL SSGMEQGSFS MGLRHSGNNS NLIRHSSSPA GLFSQINIEN  180
VYAGVRGMGT LGAVNNSIED AKFSSSRRLK NQPNYSSSGR MSSIAEIGDK GNGESSPDNE  240
AFADGNDFIT GFQVGHWDDA AIMSDNVGGL KRFRENDSKP FSGLNAAETQ NETGQTHAPL  300
AHQLSLPNTS AEMAAIEKFL QFSDSVPCKI RAKRGCATHP RSIAERVRRT KISERMRKLQ  360
DLVPNMDKQT NTADMLDLAV DYIKDLQKQV QTLSDCHAKC TCSHEKQQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954350.0BT095435.1 Soybean clone JCVI-FLGm-25M5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028190918.10.0transcription factor bHLH122-like isoform X1
TrEMBLA0A445IEP50.0A0A445IEP5_GLYSO; Transcription factor bHLH122 isoform A
STRINGGLYMA13G41670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.19e-67bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]